Gm57397 Gene Detail

Summary

• Symbol
  Gm57397
• Name
  predicted gene, 57397

• Feature Type
  lncRNA gene
• IDs
  MGI:7338707
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr11:5737497-5738455 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  88 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338707	lncRNA gene	Chr11:5737497-5738455 (-)
129S1/SvImJ	ENSMUSG00200034477	lncRNA gene	Chr11:2687638-2688156 (-)
A/J	ENSMUSG00195024233	lncRNA gene	Chr11:2611334-2611852 (-)
AKR/J	ENSMUSG00220008971	lncRNA gene	Chr11:2640641-2641159 (-)
BALB/cJ	ENSMUSG00180028353	lncRNA gene	Chr11:2627858-2628376 (-)
C3H/HeJ	ENSMUSG00175010456	lncRNA gene	Chr11:2616412-2616930 (-)
C57BL/6NJ	ENSMUSG00215032549	lncRNA gene	Chr11:2626987-2627505 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005039632	lncRNA gene	Chr11:2701753-2702271 (-)
CBA/J	ENSMUSG00210018354	lncRNA gene	Chr11:2616011-2616529 (-)
DBA/2J	ENSMUSG00185018286	lncRNA gene	Chr11:2713793-2714311 (-)
FVB/NJ	ENSMUSG00205036527	lncRNA gene	Chr11:2600163-2600681 (-)
JF1/MsJ	ENSUMUG00000049871	lncRNA gene	Chr11:2865284-2865803 (-)
LP/J	ENSMUSG00230034657	lncRNA gene	Chr11:3780171-3780689 (-)
NOD/ShiLtJ	ENSMUSG00190041015	lncRNA gene	Chr11:2603904-2604422 (-)
NZO/HlLtJ	ENSMUSG00225026019	lncRNA gene	Chr11:5831820-5832338 (-)
PWK/PhJ	ENSLUMG00010019794	lncRNA gene	Chr11:2606105-2606623 (-)
SPRET/EiJ	ENSMSPG00010008568	lncRNA gene	Chr11:2677503-2678028 (-)
WSB/EiJ	ENSIUOG00005007615	lncRNA gene	Chr11:2630801-2631319 (-)

Homology

• Gene Tree
  Gm57397
  

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000121109 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121109	Ensembl Gene Model | MGI Sequence Detail	959	C57BL/6J
transcript	ENSMUST00000247149	Ensembl | MGI Sequence Detail	959	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57397:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr106641	Chr11:5738358-5738434 (-)	59 bp
Tssr106640	Chr11:5738262-5738276 (-)	186 bp