Gm57395 Gene Detail

Summary

• Symbol
  Gm57395
• Name
  predicted gene, 57395

• Feature Type
  lncRNA gene
• IDs
  MGI:7338703
• Alliance
  genome feature page
• Transcription Start Sites
  12 TSS

Location &
Maps

• Sequence Map
  Chr11:100912248-100914068 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  111 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338703	lncRNA gene	Chr11:100912248-100914068 (+)
129S1/SvImJ	ENSMUSG00200053649	lncRNA gene	Chr11:98182810-98184630 (+)
A/J	ENSMUSG00195052966	lncRNA gene	Chr11:97876116-97877936 (+)
AKR/J	ENSMUSG00220053014	lncRNA gene	Chr11:98112498-98114318 (+)
BALB/cJ	ENSMUSG00180053066	lncRNA gene	Chr11:98244687-98246507 (+)
C3H/HeJ	ENSMUSG00175052446	lncRNA gene	Chr11:98156373-98158193 (+)
C57BL/6NJ	ENSMUSG00215054329	lncRNA gene	Chr11:97732119-97733939 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005050980	lncRNA gene	Chr11:97655159-97656978 (+)
CBA/J	ENSMUSG00210053780	lncRNA gene	Chr11:97877961-97879781 (+)
DBA/2J	ENSMUSG00185052569	lncRNA gene	Chr11:98206212-98208032 (+)
FVB/NJ	ENSMUSG00205050196	lncRNA gene	Chr11:98063091-98064911 (+)
JF1/MsJ	ENSUMUG00000056321	lncRNA gene	Chr11:98462963-98464785 (+)
LP/J	ENSMUSG00230051283	lncRNA gene	Chr11:99258902-99260722 (+)
NOD/ShiLtJ	ENSMUSG00190052660	lncRNA gene	Chr11:98242579-98244399 (+)
NZO/HlLtJ	ENSMUSG00225052771	lncRNA gene	Chr11:101294736-101296556 (+)
PWK/PhJ	ENSLUMG00010052515	lncRNA gene	Chr11:98012100-98013918 (+)
SPRET/EiJ	ENSMSPG00010051395	lncRNA gene	Chr11:98499900-98501730 (+)
WSB/EiJ	ENSIUOG00005051465	lncRNA gene	Chr11:98007067-98008888 (+)

Homology

• Gene Tree
  Gm57395
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000121184 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121184	Ensembl Gene Model | MGI Sequence Detail	1821	C57BL/6J
transcript	ENSMUST00000247407	Ensembl | MGI Sequence Detail	1821	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57395:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr104993	Chr11:100911780-100911795 (+)	-460 bp
Tssr104994	Chr11:100912263-100912277 (+)	22 bp
Tssr104995	Chr11:100913510-100913518 (+)	1,266 bp
Tssr104996	Chr11:100913561-100913572 (+)	1,319 bp
Tssr104997	Chr11:100913701-100913712 (+)	1,459 bp
Tssr104998	Chr11:100913728-100913750 (+)	1,491 bp
Tssr104999	Chr11:100913759-100913763 (+)	1,513 bp
Tssr105000	Chr11:100913784-100913798 (+)	1,543 bp
Tssr105001	Chr11:100913805-100913812 (+)	1,561 bp
Tssr105002	Chr11:100913894-100913907 (+)	1,653 bp
Tssr105003	Chr11:100913929-100913951 (+)	1,692 bp
Tssr105004	Chr11:100913954-100913984 (+)	1,721 bp