Gm57391 Gene Detail

Summary

• Symbol
  Gm57391
• Name
  predicted gene, 57391

• Feature Type
  lncRNA gene
• IDs
  MGI:7338695
• Alliance
  gene page
• Transcription Start Sites
  6 TSS

Location &
Maps

• Sequence Map
  Chr11:63880487-63880900 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  117 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338695	lncRNA gene	Chr11:63880487-63880900 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm57391
  

Sequences &
Gene Models

• All Sequences
  3

• Ensembl
  ENSMUSG00000121102 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121102	Ensembl Gene Model | MGI Sequence Detail	414	C57BL/6J
transcript	ENSMUST00000247131	Ensembl | MGI Sequence Detail	414	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57391:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr102110	Chr11:63880517-63880526 (+)	35 bp
Tssr102111	Chr11:63880533-63880555 (+)	57 bp
Tssr102112	Chr11:63880566-63880569 (+)	81 bp
Tssr102113	Chr11:63880593-63880598 (+)	109 bp
Tssr102114	Chr11:63880619-63880627 (+)	136 bp
Tssr102115	Chr11:63880700-63880709 (+)	218 bp