Gm57390 Gene Detail

Summary

• Symbol
  Gm57390
• Name
  predicted gene, 57390

• Feature Type
  lncRNA gene
• IDs
  MGI:7338693
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr11:98657199-98658573 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  37 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338693	lncRNA gene	Chr11:98657199-98658573 (+)
129S1/SvImJ	ENSMUSG00200053255	lncRNA gene	Chr11:95912313-95913693 (+)
A/J	ENSMUSG00195052881	lncRNA gene	Chr11:95627421-95628794 (+)
AKR/J	ENSMUSG00220051983	lncRNA gene	Chr11:95886590-95887963 (+)
BALB/cJ	ENSMUSG00180052701	lncRNA gene	Chr11:95899149-95900522 (+)
C3H/HeJ	ENSMUSG00175052948	lncRNA gene	Chr11:95885863-95887243 (+)
C57BL/6NJ	ENSMUSG00215054165	lncRNA gene	Chr11:95475487-95476860 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005050860	lncRNA gene	Chr11:95405197-95406564 (+)
CBA/J	ENSMUSG00210053492	lncRNA gene	Chr11:95589407-95590779 (+)
DBA/2J	ENSMUSG00185053524	lncRNA gene	Chr11:95935793-95937173 (+)
FVB/NJ	ENSMUSG00205050685	lncRNA gene	Chr11:95802721-95804101 (+)
JF1/MsJ	ENSUMUG00000056095	lncRNA gene	Chr11:96236662-96238023 (+)
LP/J	ENSMUSG00230051255	lncRNA gene	Chr11:96988683-96990063 (+)
NOD/ShiLtJ	ENSMUSG00190053108	lncRNA gene	Chr11:95977125-95978504 (+)
NZO/HlLtJ	ENSMUSG00225052992	lncRNA gene	Chr11:99038181-99039554 (+)
PWK/PhJ	ENSLUMG00010052220	lncRNA gene	Chr11:95787146-95788505 (+)
SPRET/EiJ	ENSMSPG00010051262	lncRNA gene	Chr11:96315582-96316943 (+)
WSB/EiJ	ENSIUOG00005051199	lncRNA gene	Chr11:95746681-95748055 (+)

Homology

• Gene Tree
  Gm57390
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000121096 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121096	Ensembl Gene Model | MGI Sequence Detail	1375	C57BL/6J
transcript	ENSMUST00000247115	Ensembl | MGI Sequence Detail	1375	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57390:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr104785	Chr11:98655798-98655848 (+)	-1,376 bp
Tssr104786	Chr11:98657084-98657103 (+)	-105 bp
Tssr104787	Chr11:98657140-98657173 (+)	-42 bp