Gm57388 Gene Detail

Summary

• Symbol
  Gm57388
• Name
  predicted gene, 57388

• Feature Type
  lncRNA gene
• IDs
  MGI:7338689
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:104333277-104383015 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1075 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338689	lncRNA gene	Chr11:104333277-104383015 (+)
129S1/SvImJ	ENSMUSG00200053361	lncRNA gene	Chr11:101621454-101622218 (+)
A/J	ENSMUSG00195052657	lncRNA gene	Chr11:101324073-101324837 (+)
AKR/J	ENSMUSG00220051765	lncRNA gene	Chr11:101534226-101534990 (+)
BALB/cJ	ENSMUSG00180052678	lncRNA gene	Chr11:101653789-101654553 (+)
C3H/HeJ	ENSMUSG00175052133	lncRNA gene	Chr11:101595073-101595837 (+)
C57BL/6NJ	ENSMUSG00215054300	lncRNA gene	Chr11:101156158-101156922 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005051346	lncRNA gene	Chr11:101090026-101090790 (+)
CBA/J	ENSMUSG00210053816	lncRNA gene	Chr11:101294572-101295336 (+)
DBA/2J	ENSMUSG00185052496	lncRNA gene	Chr11:101644882-101645646 (+)
FVB/NJ	ENSMUSG00205050565	lncRNA gene	Chr11:101467914-101468678 (+)
JF1/MsJ	ENSUMUG00000028281	lncRNA gene	Chr11:101913748-101914512 (+)
LP/J	ENSMUSG00230035827	lncRNA gene	Chr11:102697190-102697954 (+)
NOD/ShiLtJ	ENSMUSG00190053141	lncRNA gene	Chr11:101661868-101662632 (+)
NZO/HlLtJ	ENSMUSG00225053104	lncRNA gene	Chr11:104716979-104717743 (+)
PWK/PhJ	ENSLUMG00010052543	lncRNA gene	Chr11:101445977-101446742 (+)
SPRET/EiJ	ENSMSPG00010051157	lncRNA gene	Chr11:101918947-101919711 (+)
WSB/EiJ	ENSIUOG00005051320	lncRNA gene	Chr11:101435775-101436539 (+)

Homology

• Gene Tree
  Gm57388
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  25
• Gene trapped
  25
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000121072 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121072	Ensembl Gene Model | MGI Sequence Detail	49739	C57BL/6J
transcript	ENSMUST00000377966	Ensembl | MGI Sequence Detail	1001	Not Applicable

References

• Summaries
  All 3

  Phenotypes 1
• Earliest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm57388:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr105392	Chr11:104333300-104333316 (+)	31 bp