Gm57385 Gene Detail

Summary

• Symbol
  Gm57385
• Name
  predicted gene, 57385

• Feature Type
  lncRNA gene
• IDs
  MGI:7338683
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr11:60769660-60776756 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  208 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338683	lncRNA gene	Chr11:60769660-60776756 (+)
129S1/SvImJ	ENSMUSG00200037088	lncRNA gene	Chr11:57689420-57691756 (+)
A/J	ENSMUSG00195042810	lncRNA gene	Chr11:57722931-57725487 (+)
AKR/J	ENSMUSG00220050943	lncRNA gene	Chr11:57836908-57839244 (+)
BALB/cJ	ENSMUSG00180050117	lncRNA gene	Chr11:57782376-57784721 (+)
C3H/HeJ	ENSMUSG00175049467	lncRNA gene	Chr11:57740229-57742785 (+)
C57BL/6NJ	ENSMUSG00215039433	lncRNA gene	Chr11:57489154-57491499 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005047807	lncRNA gene	Chr11:57271512-57274072 (+)
CBA/J	ENSMUSG00210042430	lncRNA gene	Chr11:57573266-57575822 (+)
DBA/2J	ENSMUSG00185044607	lncRNA gene	Chr11:57768733-57771078 (+)
FVB/NJ	ENSMUSG00205051029	lncRNA gene	Chr11:57649390-57651742 (+)
JF1/MsJ	ENSUMUG00000051158	lncRNA gene	Chr11:58173179-58175735 (+)
LP/J	ENSMUSG00230050459	lncRNA gene	Chr11:58910723-58913059 (+)
NOD/ShiLtJ	ENSMUSG00190052402	lncRNA gene	Chr11:57763521-57765857 (+)
NZO/HlLtJ	ENSMUSG00225048771	lncRNA gene	Chr11:61058878-61061434 (+)
PWK/PhJ	ENSLUMG00010037420	lncRNA gene	Chr11:57692012-57694358 (+)
SPRET/EiJ	ENSMSPG00010042026	lncRNA gene	Chr11:58366088-58368439 (+)
WSB/EiJ	ENSIUOG00005038500	lncRNA gene	Chr11:57679929-57682268 (+)

Homology

• Gene Tree
  Gm57385
  

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000120997 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120997	Ensembl Gene Model | MGI Sequence Detail	7097	C57BL/6J
transcript	ENSMUST00000246813	Ensembl | MGI Sequence Detail	2424	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57385:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr101926	Chr11:60769017-60769022 (+)	-640 bp
Tssr101927	Chr11:60769187-60769201 (+)	-466 bp
Tssr101928	Chr11:60769770-60769825 (+)	138 bp