Gm57383 Gene Detail

Summary

• Symbol
  Gm57383
• Name
  predicted gene, 57383

• Feature Type
  lncRNA gene
• IDs
  MGI:7338679
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:100860693-100863199 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  135 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338679	lncRNA gene	Chr11:100860693-100863199 (+)
129S1/SvImJ	ENSMUSG00200053653	lncRNA gene	Chr11:98131256-98133761 (+)
A/J	ENSMUSG00195052972	lncRNA gene	Chr11:97824683-97827188 (+)
AKR/J	ENSMUSG00220053020	lncRNA gene	Chr11:98061136-98063641 (+)
BALB/cJ	ENSMUSG00180053070	lncRNA gene	Chr11:98193131-98195636 (+)
C3H/HeJ	ENSMUSG00175052448	lncRNA gene	Chr11:98104829-98107334 (+)
C57BL/6NJ	ENSMUSG00215054331	lncRNA gene	Chr11:97680527-97683032 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005050993	lncRNA gene	Chr11:97604116-97606338 (+)
CBA/J	ENSMUSG00210053781	lncRNA gene	Chr11:97826412-97828917 (+)
DBA/2J	ENSMUSG00185052575	lncRNA gene	Chr11:98154677-98157182 (+)
FVB/NJ	ENSMUSG00205050203	lncRNA gene	Chr11:98011513-98014018 (+)
JF1/MsJ	ENSUMUG00000056325	lncRNA gene	Chr11:98408328-98410843 (+)
LP/J	ENSMUSG00230051290	lncRNA gene	Chr11:99207384-99209889 (+)
NOD/ShiLtJ	ENSMUSG00190052664	lncRNA gene	Chr11:98191002-98193507 (+)
NZO/HlLtJ	ENSMUSG00225052793	lncRNA gene	Chr11:101243203-101245708 (+)
PWK/PhJ	ENSLUMG00010052520	lncRNA gene	Chr11:97957678-97960193 (+)
SPRET/EiJ	ENSMSPG00010051386	lncRNA gene	Chr11:98448779-98451276 (+)
WSB/EiJ	ENSIUOG00005051468	lncRNA gene	Chr11:97956001-97958507 (+)

Homology

• Gene Tree
  Gm57383
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120984 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120984	Ensembl Gene Model | MGI Sequence Detail	2507	C57BL/6J
transcript	ENSMUST00000246773	Ensembl | MGI Sequence Detail	2507	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57383:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr104986	Chr11:100860690-100860720 (+)	12 bp