Gm57380 Gene Detail

Summary

• Symbol
  Gm57380
• Name
  predicted gene, 57380

• Feature Type
  lncRNA gene
• IDs
  MGI:7338673
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr11:118943371-118944688 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  95 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338673	lncRNA gene	Chr11:118943371-118944688 (-)
129S1/SvImJ	ENSMUSG00200052713	lncRNA gene	Chr11:116311347-116311987 (-)
A/J	ENSMUSG00195031418	lncRNA gene	Chr11:115986279-115986919 (-)
AKR/J	ENSMUSG00220032450	lncRNA gene	Chr11:116136669-116137309 (-)
BALB/cJ	ENSMUSG00180052211	lncRNA gene	Chr11:116280245-116280885 (-)
C3H/HeJ	ENSMUSG00175046819	lncRNA gene	Chr11:116237698-116238338 (-)
C57BL/6NJ	ENSMUSG00215046597	lncRNA gene	Chr11:115806880-115807520 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005037162	lncRNA gene	Chr11:115663557-115664200 (-)
CBA/J	ENSMUSG00210050699	lncRNA gene	Chr11:115951796-115952436 (-)
DBA/2J	ENSMUSG00185027273	lncRNA gene	Chr11:116264877-116265517 (-)
FVB/NJ	ENSMUSG00205047131	lncRNA gene	Chr11:116112955-116113595 (-)
JF1/MsJ	ENSUMUG00000054663	lncRNA gene	Chr11:116556892-116557535 (-)
LP/J	ENSMUSG00230051038	lncRNA gene	Chr11:117330748-117331388 (-)
NOD/ShiLtJ	ENSMUSG00190048907	lncRNA gene	Chr11:116335320-116335960 (-)
NZO/HlLtJ	ENSMUSG00225053931	lncRNA gene	Chr11:119478978-119479617 (-)
PWK/PhJ	ENSLUMG00010024831	lncRNA gene	Chr11:116068650-116069293 (-)
SPRET/EiJ	ENSMSPG00010044173	lncRNA gene	Chr11:116643177-116643805 (-)
WSB/EiJ	ENSIUOG00005048689	lncRNA gene	Chr11:116071735-116072375 (-)

Homology

• Gene Tree
  Gm57380
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120966 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120966	Ensembl Gene Model | MGI Sequence Detail	1318	C57BL/6J
transcript	ENSMUST00000246683	Ensembl | MGI Sequence Detail	1318	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57380:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr112205	Chr11:118944259-118944263 (-)	427 bp
Tssr112204	Chr11:118944216-118944227 (-)	466 bp