Gm57378 Gene Detail

Summary

• Symbol
  Gm57378
• Name
  predicted gene, 57378

• Feature Type
  lncRNA gene
• IDs
  MGI:7338669
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr11:96720990-96722595 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  116 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338669	lncRNA gene	Chr11:96720990-96722595 (+)
129S1/SvImJ	ENSMUSG00200053459	lncRNA gene	Chr11:93965500-93966642 (+)
A/J	ENSMUSG00195053178	lncRNA gene	Chr11:93685564-93686706 (+)
AKR/J	ENSMUSG00220052313	lncRNA gene	Chr11:93944708-93945850 (+)
BALB/cJ	ENSMUSG00180052587	lncRNA gene	Chr11:93950150-93951292 (+)
C3H/HeJ	ENSMUSG00175051809	lncRNA gene	Chr11:93945906-93947048 (+)
C57BL/6NJ	ENSMUSG00215054096	lncRNA gene	Chr11:93538618-93539760 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005051847	lncRNA gene	Chr11:93389644-93390782 (+)
CBA/J	ENSMUSG00210053672	lncRNA gene	Chr11:93647815-93648957 (+)
DBA/2J	ENSMUSG00185053062	lncRNA gene	Chr11:93995779-93996921 (+)
FVB/NJ	ENSMUSG00205051477	lncRNA gene	Chr11:93852522-93853664 (+)
JF1/MsJ	ENSUMUG00000055664	lncRNA gene	Chr11:94300893-94302035 (+)
LP/J	ENSMUSG00230051009	lncRNA gene	Chr11:95048494-95049636 (+)
NOD/ShiLtJ	ENSMUSG00190052720	lncRNA gene	Chr11:94043710-94044852 (+)
NZO/HlLtJ	ENSMUSG00225052624	lncRNA gene	Chr11:97104013-97105155 (+)
PWK/PhJ	ENSLUMG00010051986	lncRNA gene	Chr11:93852733-93853875 (+)
SPRET/EiJ	ENSMSPG00010050980	lncRNA gene	Chr11:94349746-94350893 (+)
WSB/EiJ	ENSIUOG00005051525	lncRNA gene	Chr11:93798205-93799347 (+)

Homology

• Gene Tree
  Gm57378
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120186 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120186	Ensembl Gene Model | MGI Sequence Detail	1606	C57BL/6J
transcript	ENSMUST00000241803	Ensembl | MGI Sequence Detail	1606	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:152068 Friedel RH, et al., EUCOMM--the European conditional mouse mutagenesis program. Brief Funct Genomic Proteomic. 2007 Sep;6(3):180-5

TSS for Gm57378:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr104575	Chr11:96720423-96720469 (+)	-544 bp
Tssr104576	Chr11:96721016-96721042 (+)	39 bp