Gm57377 Gene Detail

Summary

• Symbol
  Gm57377
• Name
  predicted gene, 57377

• Feature Type
  lncRNA gene
• IDs
  MGI:7338667
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr11:54751613-54756971 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  251 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338667	lncRNA gene	Chr11:54751613-54756971 (+)
129S1/SvImJ	ENSMUSG00200037049	lncRNA gene	Chr11:51747238-51748107 (+)
A/J	ENSMUSG00195043619	lncRNA gene	Chr11:51684573-51685442 (+)
AKR/J	ENSMUSG00220050156	lncRNA gene	Chr11:51880998-51881867 (+)
BALB/cJ	ENSMUSG00180050154	lncRNA gene	Chr11:51750270-51751139 (+)
C3H/HeJ	ENSMUSG00175049093	lncRNA gene	Chr11:51715833-51716702 (+)
C57BL/6NJ	ENSMUSG00215040835	lncRNA gene	Chr11:51539208-51540077 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005045040	lncRNA gene	Chr11:51306721-51307589 (+)
CBA/J	ENSMUSG00210040639	lncRNA gene	Chr11:51571696-51572565 (+)
DBA/2J	ENSMUSG00185044119	lncRNA gene	Chr11:51783017-51783886 (+)
FVB/NJ	ENSMUSG00205051000	lncRNA gene	Chr11:51616445-51617314 (+)
JF1/MsJ	ENSUMUG00000052603	lncRNA gene	Chr11:52152075-52152947 (+)
LP/J	ENSMUSG00230050230	lncRNA gene	Chr11:52964815-52965684 (+)
NOD/ShiLtJ	ENSMUSG00190052556	lncRNA gene	Chr11:51827146-51828015 (+)
NZO/HlLtJ	ENSMUSG00225032961	lncRNA gene	Chr11:55004479-55005351 (+)
PWK/PhJ	ENSLUMG00010035352	lncRNA gene	Chr11:51597725-51598594 (+)
SPRET/EiJ	ENSMSPG00010041558	lncRNA gene	Chr11:52292435-52293300 (+)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm57377
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  25

• Ensembl
  ENSMUSG00000120956 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120956	Ensembl Gene Model | MGI Sequence Detail	5359	C57BL/6J
transcript	ENSMUST00000246645	Ensembl | MGI Sequence Detail	897	Not Applicable

References

• Summaries
  All 3

  Phenotypes 1
• Earliest
  J:152068 Friedel RH, et al., EUCOMM--the European conditional mouse mutagenesis program. Brief Funct Genomic Proteomic. 2007 Sep;6(3):180-5

TSS for Gm57377:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr3501	Chr11:54751593-54751604 (+)	-14 bp
Tssr101539	Chr11:54751616-54751662 (+)	26 bp
Tssr101540	Chr11:54751841-54751852 (+)	234 bp