Gm57377 Gene Detail

Summary

• Symbol
  Gm57377
• Name
  predicted gene, 57377

• Feature Type
  lncRNA gene
• IDs
  MGI:7338667
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr11:54751613-54756971 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  251 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338667	lncRNA gene	Chr11:54751613-54756971 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm57377
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  9

• Ensembl
  ENSMUSG00000120956 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120956	Ensembl Gene Model | MGI Sequence Detail	5359	C57BL/6J
transcript	ENSMUST00000246645	Ensembl | MGI Sequence Detail	897	Not Applicable

References

• Summaries
  All 3

  Phenotypes 1
• Earliest
  J:152068 Friedel RH, et al., EUCOMM--the European conditional mouse mutagenesis program. Brief Funct Genomic Proteomic. 2007 Sep;6(3):180-5

TSS for Gm57377:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr3501	Chr11:54751593-54751604 (+)	-14 bp
Tssr101539	Chr11:54751616-54751662 (+)	26 bp
Tssr101540	Chr11:54751841-54751852 (+)	234 bp