Gm57373 Gene Detail

Summary

• Symbol
  Gm57373
• Name
  predicted gene, 57373

• Feature Type
  lncRNA gene
• IDs
  MGI:7338659
• Alliance
  genome feature page
• Transcription Start Sites
  10 TSS

Location &
Maps

• Sequence Map
  Chr11:101987133-101988888 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  152 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338659	lncRNA gene	Chr11:101987133-101988888 (+)
129S1/SvImJ	ENSMUSG00200053489	lncRNA gene	Chr11:99274557-99275408 (+)
A/J	ENSMUSG00195052993	lncRNA gene	Chr11:98970216-98971067 (+)
AKR/J	ENSMUSG00220053056	lncRNA gene	Chr11:99189978-99190829 (+)
BALB/cJ	ENSMUSG00180052340	lncRNA gene	Chr11:99322194-99323045 (+)
C3H/HeJ	ENSMUSG00175052402	lncRNA gene	Chr11:99248053-99248904 (+)
C57BL/6NJ	ENSMUSG00215054467	lncRNA gene	Chr11:98809679-98810530 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005051573	lncRNA gene	Chr11:98744735-98745586 (+)
CBA/J	ENSMUSG00210053641	lncRNA gene	Chr11:98955509-98956360 (+)
DBA/2J	ENSMUSG00185052525	lncRNA gene	Chr11:99297927-99298778 (+)
FVB/NJ	ENSMUSG00205050513	lncRNA gene	Chr11:99140397-99141248 (+)
JF1/MsJ	ENSUMUG00000056429	lncRNA gene	Chr11:99558672-99559523 (+)
LP/J	ENSMUSG00230051093	lncRNA gene	Chr11:100350499-100351350 (+)
NOD/ShiLtJ	ENSMUSG00190052171	lncRNA gene	Chr11:99336890-99337741 (+)
NZO/HlLtJ	ENSMUSG00225053483	lncRNA gene	Chr11:102373252-102374103 (+)
PWK/PhJ	ENSLUMG00010052158	lncRNA gene	Chr11:99094062-99094913 (+)
SPRET/EiJ	ENSMSPG00010050838	lncRNA gene	Chr11:99590569-99591420 (+)
WSB/EiJ	ENSIUOG00005051483	lncRNA gene	Chr11:99091110-99091961 (+)

Homology

• Gene Tree
  Gm57373
  

Sequences &
Gene Models

• All Sequences
  27

• Ensembl
  ENSMUSG00000120019 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120019	Ensembl Gene Model | MGI Sequence Detail	1756	C57BL/6J
transcript	ENSMUST00000241117	Ensembl | MGI Sequence Detail	1056	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57373:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr105178	Chr11:101987162-101987169 (+)	33 bp
Tssr105179	Chr11:101988032-101988062 (+)	914 bp
Tssr105180	Chr11:101988064-101988086 (+)	942 bp
Tssr105181	Chr11:101988089-101988117 (+)	970 bp
Tssr3680	Chr11:101988135-101988136 (+)	1,003 bp
Tssr3682	Chr11:101988319-101988324 (+)	1,189 bp
Tssr105182	Chr11:101988328-101988332 (+)	1,197 bp
Tssr105183	Chr11:101988339-101988344 (+)	1,209 bp
Tssr105184	Chr11:101988388-101988395 (+)	1,259 bp
Tssr105185	Chr11:101988671-101988675 (+)	1,540 bp