Gm57371 Gene Detail

Summary

• Symbol
  Gm57371
• Name
  predicted gene, 57371

• Feature Type
  lncRNA gene
• IDs
  MGI:7338655
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr11:31726870-31754557 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  990 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338655	lncRNA gene	Chr11:31726870-31754557 (+)
129S1/SvImJ	ENSMUSG00200010384	lncRNA gene	Chr11:28781694-28782099 (+)
A/J	ENSMUSG00195014158	lncRNA gene	Chr11:28700883-28701288 (+)
AKR/J	ENSMUSG00220008642	lncRNA gene	Chr11:28889893-28890296 (+)
BALB/cJ	ENSMUSG00180008194	lncRNA gene	Chr11:28707904-28708309 (+)
C3H/HeJ	ENSMUSG00175016651	lncRNA gene	Chr11:28706725-28707130 (+)
C57BL/6NJ	ENSMUSG00215011154	lncRNA gene	Chr11:28653289-28653694 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005029268	lncRNA gene	Chr11:28577981-28578386 (+)
CBA/J	ENSMUSG00210010049	lncRNA gene	Chr11:28589546-28589949 (+)
DBA/2J	ENSMUSG00185019745	lncRNA gene	Chr11:28786893-28787298 (+)
FVB/NJ	ENSMUSG00205022891	lncRNA gene	Chr11:28772168-28772571 (+)
JF1/MsJ	ENSUMUG00000011507	lncRNA gene	Chr11:29029381-29029786 (+)
LP/J	ENSMUSG00230015509	lncRNA gene	Chr11:29926102-29926507 (+)
NOD/ShiLtJ	ENSMUSG00190027544	lncRNA gene	Chr11:28846289-28846692 (+)
NZO/HlLtJ	ENSMUSG00225031056	lncRNA gene	Chr11:31832368-31832773 (+)
PWK/PhJ	ENSLUMG00010017427	lncRNA gene	Chr11:28670531-28670936 (+)
SPRET/EiJ	ENSMSPG00010019861	lncRNA gene	Chr11:29057232-29057637 (+)
WSB/EiJ	ENSIUOG00005013288	lncRNA gene	Chr11:28780164-28780569 (+)

Homology

• Gene Tree
  Gm57371
  

Sequences &
Gene Models

• All Sequences
  25

• Ensembl
  ENSMUSG00000120889 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120889	Ensembl Gene Model | MGI Sequence Detail	27688	C57BL/6J
transcript	ENSMUST00000316075	Ensembl | MGI Sequence Detail	873	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57371:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr100774	Chr11:31746433-31746461 (+)	19,577 bp
Tssr100775	Chr11:31746508-31746517 (+)	19,643 bp