Gm57369 Gene Detail

Summary

• Symbol
  Gm57369
• Name
  predicted gene, 57369

• Feature Type
  lncRNA gene
• IDs
  MGI:7338651
• Alliance
  genome feature page
• Transcription Start Sites
  7 TSS

Location &
Maps

• Sequence Map
  Chr11:87641543-87643619 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  37 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338651	lncRNA gene	Chr11:87641543-87643619 (+)
129S1/SvImJ	ENSMUSG00200020559	lncRNA gene	Chr11:84772123-84772511 (+)
A/J	ENSMUSG00195009660	lncRNA gene	Chr11:84626998-84627386 (+)
AKR/J	ENSMUSG00220012325	lncRNA gene	Chr11:84826544-84826932 (+)
BALB/cJ	ENSMUSG00180012014	lncRNA gene	Chr11:84833770-84834158 (+)
C3H/HeJ	ENSMUSG00175032912	lncRNA gene	Chr11:84773571-84773959 (+)
C57BL/6NJ	ENSMUSG00215033405	lncRNA gene	Chr11:84418284-84418672 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005017593	lncRNA gene	Chr11:84327685-84328073 (+)
CBA/J	ENSMUSG00210040576	lncRNA gene	Chr11:84591115-84591503 (+)
DBA/2J	ENSMUSG00185020290	lncRNA gene	Chr11:84907838-84908226 (+)
FVB/NJ	ENSMUSG00205022109	lncRNA gene	Chr11:84786752-84787140 (+)
JF1/MsJ	ENSUMUG00000031114	lncRNA gene	Chr11:85232197-85232585 (+)
LP/J	ENSMUSG00230030290	lncRNA gene	Chr11:85941085-85941473 (+)
NOD/ShiLtJ	ENSMUSG00190019868	lncRNA gene	Chr11:84939130-84939518 (+)
NZO/HlLtJ	ENSMUSG00225039668	lncRNA gene	Chr11:88057013-88057401 (+)
PWK/PhJ	ENSLUMG00010033012	lncRNA gene	Chr11:84790872-84791260 (+)
SPRET/EiJ	ENSMSPG00010028797	lncRNA gene	Chr11:85189081-85189443 (+)
WSB/EiJ	ENSIUOG00005008137	lncRNA gene	Chr11:84745619-84746007 (+)

Homology

• Gene Tree
  Gm57369
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120867 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120867	Ensembl Gene Model | MGI Sequence Detail	2077	C57BL/6J
transcript	ENSMUST00000246200	Ensembl | MGI Sequence Detail	2077	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57369:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr103959	Chr11:87639780-87639795 (+)	-1,755 bp
Tssr103960	Chr11:87640558-87640577 (+)	-975 bp
Tssr103961	Chr11:87640704-87640727 (+)	-827 bp
Tssr103962	Chr11:87642017-87642042 (+)	487 bp
Tssr103963	Chr11:87642618-87642636 (+)	1,084 bp
Tssr103964	Chr11:87642645-87642669 (+)	1,114 bp
Tssr103965	Chr11:87642734-87642750 (+)	1,199 bp