Gm57359 Gene Detail

Summary

• Symbol
  Gm57359
• Name
  predicted gene, 57359

• Feature Type
  lncRNA gene
• IDs
  MGI:7338631
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:79863318-79867142 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  257 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338631	lncRNA gene	Chr11:79863318-79867142 (-)
129S1/SvImJ	ENSMUSG00200052310	lncRNA gene	Chr11:76981587-76982868 (-)
A/J	ENSMUSG00195046295	lncRNA gene	Chr11:76860494-76861775 (-)
AKR/J	ENSMUSG00220048877	lncRNA gene	Chr11:77082223-77083502 (-)
BALB/cJ	ENSMUSG00180044230	lncRNA gene	Chr11:77043223-77044502 (-)
C3H/HeJ	ENSMUSG00175041251	lncRNA gene	Chr11:77025385-77026664 (-)
C57BL/6NJ	ENSMUSG00215043514	lncRNA gene	Chr11:76642449-76643729 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005046249	lncRNA gene	Chr11:76537977-76539249 (-)
CBA/J	ENSMUSG00210046547	lncRNA gene	Chr11:76849033-76850314 (-)
DBA/2J	ENSMUSG00185040696	lncRNA gene	Chr11:77106910-77108191 (-)
FVB/NJ	ENSMUSG00205046662	lncRNA gene	Chr11:76932525-76933804 (-)
JF1/MsJ	ENSUMUG00000052624	lncRNA gene	Chr11:77486003-77487276 (-)
LP/J	ENSMUSG00230049855	lncRNA gene	Chr11:78137179-78138460 (-)
NOD/ShiLtJ	ENSMUSG00190048124	lncRNA gene	Chr11:77153846-77155128 (-)
NZO/HlLtJ	ENSMUSG00225040107	lncRNA gene	Chr11:80304741-80306021 (-)
PWK/PhJ	ENSLUMG00010025741	lncRNA gene	Chr11:77014733-77016006 (-)
SPRET/EiJ	ENSMSPG00010045449	lncRNA gene	Chr11:77400963-77402249 (-)
WSB/EiJ	ENSIUOG00005037408	lncRNA gene	Chr11:76989407-76990686 (-)

Homology

• Gene Tree
  Gm57359
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  23

• Ensembl
  ENSMUSG00000120103 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120103	Ensembl Gene Model | MGI Sequence Detail	3825	C57BL/6J
transcript	ENSMUST00000276547	Ensembl | MGI Sequence Detail	2227	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm57359:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr109528	Chr11:79865282-79865294 (-)	1,854 bp