Gm57348 Gene Detail

Summary

• Symbol
  Gm57348
• Name
  predicted gene, 57348

• Feature Type
  lncRNA gene
• IDs
  MGI:7338609
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr11:34724509-34726419 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  178 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338609	lncRNA gene	Chr11:34724509-34726419 (+)
129S1/SvImJ	ENSMUSG00200007347	lncRNA gene	Chr11:31770153-31770999 (+)
A/J	ENSMUSG00195007269	lncRNA gene	Chr11:31700946-31701792 (+)
AKR/J	ENSMUSG00220003369	lncRNA gene	Chr11:31886910-31887756 (+)
BALB/cJ	ENSMUSG00180001803	lncRNA gene	Chr11:31702058-31702904 (+)
C3H/HeJ	ENSMUSG00175003802	lncRNA gene	Chr11:31674745-31675591 (+)
C57BL/6NJ	ENSMUSG00215010476	lncRNA gene	Chr11:31623648-31624494 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005029926	lncRNA gene	Chr11:31544316-31545162 (+)
CBA/J	ENSMUSG00210006911	lncRNA gene	Chr11:31557959-31558805 (+)
DBA/2J	ENSMUSG00185010617	lncRNA gene	Chr11:31753975-31754821 (+)
FVB/NJ	ENSMUSG00205012199	lncRNA gene	Chr11:31784383-31785229 (+)
JF1/MsJ	ENSUMUG00000005144	lncRNA gene	Chr11:32075539-32076385 (+)
LP/J	ENSMUSG00230003987	lncRNA gene	Chr11:32922481-32923327 (+)
NOD/ShiLtJ	ENSMUSG00190007423	lncRNA gene	Chr11:31825724-31826570 (+)
NZO/HlLtJ	ENSMUSG00225030837	lncRNA gene	Chr11:34868242-34869088 (+)
PWK/PhJ	ENSLUMG00010007324	lncRNA gene	Chr11:31648838-31649684 (+)
SPRET/EiJ	ENSMSPG00010002265	lncRNA gene	Chr11:32034154-32035000 (+)
WSB/EiJ	ENSIUOG00005002123	lncRNA gene	Chr11:31719440-31720286 (+)

Homology

• Gene Tree
  Gm57348
  

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000120536 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120536	Ensembl Gene Model | MGI Sequence Detail	1911	C57BL/6J
transcript	ENSMUST00000244047	Ensembl | MGI Sequence Detail	1226	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57348:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr100930	Chr11:34724546-34724599 (+)	64 bp
Tssr100931	Chr11:34724613-34724618 (+)	107 bp