Gm57346 Gene Detail

Summary

• Symbol
  Gm57346
• Name
  predicted gene, 57346

• Feature Type
  lncRNA gene
• IDs
  MGI:7338605
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:69307611-69309006 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  63 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338605	lncRNA gene	Chr11:69307611-69309006 (-)
129S1/SvImJ	ENSMUSG00200050386	lncRNA gene	Chr11:66253350-66254695 (-)
A/J	ENSMUSG00195052611	lncRNA gene	Chr11:66278692-66280038 (-)
AKR/J	ENSMUSG00220054221	lncRNA gene	Chr11:66388446-66389789 (-)
BALB/cJ	ENSMUSG00180054096	lncRNA gene	Chr11:66349955-66351301 (-)
C3H/HeJ	ENSMUSG00175054504	lncRNA gene	Chr11:66300257-66301603 (-)
C57BL/6NJ	ENSMUSG00215055035	lncRNA gene	Chr11:66076589-66077932 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005053708	lncRNA gene	Chr11:65835339-65836682 (-)
CBA/J	ENSMUSG00210054430	lncRNA gene	Chr11:66154327-66155673 (-)
DBA/2J	ENSMUSG00185056723	lncRNA gene	Chr11:66353752-66355095 (-)
FVB/NJ	ENSMUSG00205053903	lncRNA gene	Chr11:66245420-66246766 (-)
JF1/MsJ	ENSUMUG00000057313	lncRNA gene	Chr11:66751939-66753282 (-)
LP/J	ENSMUSG00230053714	lncRNA gene	Chr11:67463711-67465057 (-)
NOD/ShiLtJ	ENSMUSG00190054281	lncRNA gene	Chr11:66383081-66384427 (-)
NZO/HlLtJ	ENSMUSG00225048463	lncRNA gene	Chr11:69644215-69645561 (-)
PWK/PhJ	ENSLUMG00010053687	lncRNA gene	Chr11:66268855-66270198 (-)
SPRET/EiJ	ENSMSPG00010049290	lncRNA gene	Chr11:66997941-66999285 (-)
WSB/EiJ	ENSIUOG00005052683	lncRNA gene	Chr11:66282355-66283699 (-)

Homology

• Gene Tree
  Gm57346
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120486 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120486	Ensembl Gene Model | MGI Sequence Detail	1396	C57BL/6J
transcript	ENSMUST00000243644	Ensembl | MGI Sequence Detail	1396	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57346:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr108687	Chr11:69308960-69308973 (-)	39 bp