Gm57343 Gene Detail

Summary

• Symbol
  Gm57343
• Name
  predicted gene, 57343

• Feature Type
  lncRNA gene
• IDs
  MGI:7338599
• Alliance
  genome feature page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr11:94100650-94101924 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  84 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338599	lncRNA gene	Chr11:94100650-94101924 (+)
129S1/SvImJ	ENSMUSG00200020593	lncRNA gene	Chr11:91349202-91349599 (+)
A/J	ENSMUSG00195009908	lncRNA gene	Chr11:91081593-91081990 (+)
AKR/J	ENSMUSG00220012266	lncRNA gene	Chr11:91333915-91334312 (+)
BALB/cJ	ENSMUSG00180011943	lncRNA gene	Chr11:91318387-91318784 (+)
C3H/HeJ	ENSMUSG00175032357	lncRNA gene	Chr11:91341134-91341531 (+)
C57BL/6NJ	ENSMUSG00215030845	lncRNA gene	Chr11:90915802-90916199 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005017630	lncRNA gene	Chr11:90766477-90766874 (+)
CBA/J	ENSMUSG00210041600	lncRNA gene	Chr11:91044733-91045130 (+)
DBA/2J	ENSMUSG00185020739	lncRNA gene	Chr11:91365626-91366023 (+)
FVB/NJ	ENSMUSG00205023166	lncRNA gene	Chr11:91255951-91256348 (+)
JF1/MsJ	ENSUMUG00000056435	lncRNA gene	Chr11:91712488-91712885 (+)
LP/J	ENSMUSG00230051427	lncRNA gene	Chr11:92432513-92432910 (+)
NOD/ShiLtJ	ENSMUSG00190020795	lncRNA gene	Chr11:91412204-91412601 (+)
NZO/HlLtJ	ENSMUSG00225053354	lncRNA gene	Chr11:94473116-94473513 (+)
PWK/PhJ	ENSLUMG00010035155	lncRNA gene	Chr11:91245403-91245801 (+)
SPRET/EiJ	ENSMSPG00010029946	lncRNA gene	Chr11:91750192-91750589 (+)
WSB/EiJ	ENSIUOG00005008426	lncRNA gene	Chr11:91194831-91195228 (+)

Homology

• Gene Tree
  Gm57343
  

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000120459 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120459	Ensembl Gene Model | MGI Sequence Detail	1275	C57BL/6J
transcript	ENSMUST00000243437	Ensembl | MGI Sequence Detail	1275	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57343:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr104178	Chr11:94100654-94100678 (+)	16 bp
Tssr104179	Chr11:94100695-94100724 (+)	60 bp
Tssr104180	Chr11:94101230-94101262 (+)	596 bp
Tssr104181	Chr11:94101265-94101280 (+)	623 bp