Gm57342 Gene Detail

Summary

• Symbol
  Gm57342
• Name
  predicted gene, 57342

• Feature Type
  lncRNA gene
• IDs
  MGI:7338597
• Alliance
  genome feature page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr11:97200404-97201227 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  102 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338597	lncRNA gene	Chr11:97200404-97201227 (+)
129S1/SvImJ	ENSMUSG00200053014	lncRNA gene	Chr11:94447332-94448108 (+)
A/J	ENSMUSG00195052810	lncRNA gene	Chr11:94170936-94171712 (+)
AKR/J	ENSMUSG00220051863	lncRNA gene	Chr11:94430060-94430836 (+)
BALB/cJ	ENSMUSG00180052818	lncRNA gene	Chr11:94435654-94436430 (+)
C3H/HeJ	ENSMUSG00175053070	lncRNA gene	Chr11:94427403-94428179 (+)
C57BL/6NJ	ENSMUSG00215054392	lncRNA gene	Chr11:94018246-94019022 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005051194	lncRNA gene	Chr11:93880487-93881263 (+)
CBA/J	ENSMUSG00210053602	lncRNA gene	Chr11:94133070-94133846 (+)
DBA/2J	ENSMUSG00185053020	lncRNA gene	Chr11:94477310-94478086 (+)
FVB/NJ	ENSMUSG00205050011	lncRNA gene	Chr11:94337900-94338676 (+)
JF1/MsJ	ENSUMUG00000056017	lncRNA gene	Chr11:94786903-94787679 (+)
LP/J	ENSMUSG00230050920	lncRNA gene	Chr11:95530309-95531085 (+)
NOD/ShiLtJ	ENSMUSG00190051857	lncRNA gene	Chr11:94521542-94522318 (+)
NZO/HlLtJ	ENSMUSG00225052460	lncRNA gene	Chr11:97584298-97585074 (+)
PWK/PhJ	ENSLUMG00010052330	lncRNA gene	Chr11:94330806-94331582 (+)
SPRET/EiJ	ENSMSPG00010050602	lncRNA gene	Chr11:94827674-94828461 (+)
WSB/EiJ	ENSIUOG00005051922	lncRNA gene	Chr11:94276930-94277706 (+)

Homology

• Gene Tree
  Gm57342
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  2
• Gene trapped
  2
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120452 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120452	Ensembl Gene Model | MGI Sequence Detail	824	C57BL/6J
transcript	ENSMUST00000243396	Ensembl | MGI Sequence Detail	824	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm57342:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr104608	Chr11:97200413-97200451 (+)	28 bp
Tssr104609	Chr11:97200471-97200485 (+)	74 bp
Tssr104610	Chr11:97200506-97200526 (+)	112 bp
Tssr104611	Chr11:97201042-97201051 (+)	643 bp
Tssr104612	Chr11:97201080-97201104 (+)	688 bp