Gm57335 Gene Detail

Summary

• Symbol
  Gm57335
• Name
  predicted gene, 57335

• Feature Type
  lncRNA gene
• IDs
  MGI:7338583
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:59119154-59125902 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  238 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338583	lncRNA gene	Chr11:59119154-59125902 (+)
129S1/SvImJ	ENSMUSG00200037508	lncRNA gene	Chr11:56126542-56127960 (+)
A/J	ENSMUSG00195042444	lncRNA gene	Chr11:56054911-56056329 (+)
AKR/J	ENSMUSG00220050212	lncRNA gene	Chr11:56223259-56224677 (+)
BALB/cJ	ENSMUSG00180050427	lncRNA gene	Chr11:56142778-56144196 (+)
C3H/HeJ	ENSMUSG00175048223	lncRNA gene	Chr11:56090083-56091501 (+)
C57BL/6NJ	ENSMUSG00215041016	lncRNA gene	Chr11:55910110-55911527 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005047252	lncRNA gene	Chr11:55633992-55635610 (+)
CBA/J	ENSMUSG00210039380	lncRNA gene	Chr11:55941463-55942881 (+)
DBA/2J	ENSMUSG00185044955	lncRNA gene	Chr11:56126413-56127831 (+)
FVB/NJ	ENSMUSG00205052046	lncRNA gene	Chr11:55995105-55996523 (+)
JF1/MsJ	ENSUMUG00000050901	lncRNA gene	Chr11:56473213-56474630 (+)
LP/J	ENSMUSG00230050508	lncRNA gene	Chr11:57334565-57335983 (+)
NOD/ShiLtJ	ENSMUSG00190052507	lncRNA gene	Chr11:56196019-56197437 (+)
NZO/HlLtJ	ENSMUSG00225032827	lncRNA gene	Chr11:59333824-59335242 (+)
PWK/PhJ	ENSLUMG00010035088	lncRNA gene	Chr11:55941034-55942451 (+)
SPRET/EiJ	ENSMSPG00010041645	lncRNA gene	Chr11:56714503-56715889 (+)
WSB/EiJ	ENSIUOG00005040416	lncRNA gene	Chr11:55993965-55995382 (+)

Homology

• Gene Tree
  Gm57335
  

Sequences &
Gene Models

• All Sequences
  24

• Ensembl
  ENSMUSG00000120286 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120286	Ensembl Gene Model | MGI Sequence Detail	6749	C57BL/6J
transcript	ENSMUST00000242297	Ensembl | MGI Sequence Detail	1527	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57335:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr101793	Chr11:59119218-59119223 (+)	67 bp