Gm57327 Gene Detail

Summary

• Symbol
  Gm57327
• Name
  predicted gene, 57327

• Feature Type
  lncRNA gene
• IDs
  MGI:7338567
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:120882001-120906249 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  730 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338567	lncRNA gene	Chr11:120882001-120906249 (+)
129S1/SvImJ	ENSMUSG00200052369	lncRNA gene	Chr11:118245818-118248101 (+)
A/J	ENSMUSG00195032851	lncRNA gene	Chr11:117920862-117923145 (+)
AKR/J	ENSMUSG00220032665	lncRNA gene	Chr11:118071257-118073540 (+)
BALB/cJ	ENSMUSG00180052075	lncRNA gene	Chr11:118220843-118223126 (+)
C3H/HeJ	ENSMUSG00175046041	lncRNA gene	Chr11:118171294-118173577 (+)
C57BL/6NJ	ENSMUSG00215046807	lncRNA gene	Chr11:117741334-117743617 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005035898	lncRNA gene	Chr11:117592236-117594519 (+)
CBA/J	ENSMUSG00210050763	lncRNA gene	Chr11:117885333-117887616 (+)
DBA/2J	ENSMUSG00185027417	lncRNA gene	Chr11:118198497-118200780 (+)
FVB/NJ	ENSMUSG00205046723	lncRNA gene	Chr11:118044552-118046835 (+)
JF1/MsJ	ENSUMUG00000055013	lncRNA gene	Chr11:118483657-118485940 (+)
LP/J	ENSMUSG00230050998	lncRNA gene	Chr11:119264995-119267278 (+)
NOD/ShiLtJ	ENSMUSG00190050665	lncRNA gene	Chr11:118269716-118271999 (+)
NZO/HlLtJ	ENSMUSG00225053889	lncRNA gene	Chr11:121420672-121422955 (+)
PWK/PhJ	ENSLUMG00010024452	lncRNA gene	Chr11:118002720-118005003 (+)
SPRET/EiJ	ENSMSPG00010043623	lncRNA gene	Chr11:118572388-118574671 (+)
WSB/EiJ	ENSIUOG00005048729	lncRNA gene	Chr11:118016530-118018813 (+)

Homology

• Gene Tree
  Gm57327
  

Sequences &
Gene Models

• All Sequences
  25

• Ensembl
  ENSMUSG00000120010 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120010	Ensembl Gene Model | MGI Sequence Detail	24249	C57BL/6J
transcript	ENSMUST00000241013	Ensembl | MGI Sequence Detail	3077	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57327:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr106388	Chr11:120881384-120881401 (+)	-608 bp