Gm57325 Gene Detail

Summary

• Symbol
  Gm57325
• Name
  predicted gene, 57325

• Feature Type
  lncRNA gene
• IDs
  MGI:7338563
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:139470448-139471036 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  146 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338563	lncRNA gene	Chr5:139470448-139471036 (+)
129S1/SvImJ	ENSMUSG00200042461	lncRNA gene	Chr5:133339054-133339638 (+)
A/J	ENSMUSG00195046450	lncRNA gene	Chr5:132959490-132960074 (+)
AKR/J	ENSMUSG00220024241	lncRNA gene	Chr5:132221712-132222296 (+)
BALB/cJ	ENSMUSG00180033250	lncRNA gene	Chr5:133055921-133056505 (+)
C3H/HeJ	ENSMUSG00175047887	lncRNA gene	Chr5:134984276-134984860 (+)
C57BL/6NJ	ENSMUSG00215042029	lncRNA gene	Chr5:132914690-132915274 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005037292	lncRNA gene	Chr5:132385359-132385911 (+)
CBA/J	ENSMUSG00210024178	lncRNA gene	Chr5:133801487-133802071 (+)
DBA/2J	ENSMUSG00185055041	lncRNA gene	Chr5:136816803-136817387 (+)
FVB/NJ	ENSMUSG00205045656	lncRNA gene	Chr5:132616709-132617293 (+)
JF1/MsJ	ENSUMUG00000054408	lncRNA gene	Chr5:139702354-139702955 (+)
LP/J	ENSMUSG00230049412	lncRNA gene	Chr5:140929737-140930321 (+)
NOD/ShiLtJ	ENSMUSG00190044715	lncRNA gene	Chr5:132755533-132756117 (+)
NZO/HlLtJ	ENSMUSG00225023970	lncRNA gene	Chr5:148403386-148403970 (+)
PWK/PhJ	ENSLUMG00010022380	lncRNA gene	Chr5:131430441-131431042 (+)
SPRET/EiJ	ENSMSPG00010041104	lncRNA gene	Chr5:135019998-135020377 (+)
WSB/EiJ	ENSIUOG00005038150	lncRNA gene	Chr5:135298304-135298873 (+)

Homology

• Gene Tree
  Gm57325
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000121177 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121177	Ensembl Gene Model | MGI Sequence Detail	589	C57BL/6J
transcript	ENSMUST00000247391	Ensembl | MGI Sequence Detail	589	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57325:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr49516	Chr5:139470436-139470476 (+)	8 bp