Gm57323 Gene Detail

Summary

• Symbol
  Gm57323
• Name
  predicted gene, 57323

• Feature Type
  lncRNA gene
• IDs
  MGI:7338559
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr5:105841568-105844079 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  185 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338559	lncRNA gene	Chr5:105841568-105844079 (-)
129S1/SvImJ	ENSMUSG00200006310	lncRNA gene	Chr5:99573750-99576183 (-)
A/J	ENSMUSG00195037514	lncRNA gene	Chr5:99036732-99039125 (-)
AKR/J	ENSMUSG00220038401	lncRNA gene	Chr5:98592251-98594684 (-)
BALB/cJ	ENSMUSG00180035734	lncRNA gene	Chr5:99188885-99191278 (-)
C3H/HeJ	ENSMUSG00175036189	lncRNA gene	Chr5:101223144-101225535 (-)
C57BL/6NJ	ENSMUSG00215019477	lncRNA gene	Chr5:99243306-99245740 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005024238	lncRNA gene	Chr5:98465432-98467841 (-)
CBA/J	ENSMUSG00210034296	lncRNA gene	Chr5:99980913-99983303 (-)
DBA/2J	ENSMUSG00185049665	lncRNA gene	Chr5:102907504-102909939 (-)
FVB/NJ	ENSMUSG00205041836	lncRNA gene	Chr5:98890404-98892794 (-)
JF1/MsJ	ENSUMUG00000019692	lncRNA gene	Chr5:105936054-105938518 (-)
LP/J	ENSMUSG00230031774	lncRNA gene	Chr5:107115053-107117486 (-)
NOD/ShiLtJ	ENSMUSG00190028873	lncRNA gene	Chr5:98908091-98910523 (-)
NZO/HlLtJ	ENSMUSG00225026264	lncRNA gene	Chr5:114736746-114739179 (-)
PWK/PhJ	ENSLUMG00010015946	lncRNA gene	Chr5:97943572-97946016 (-)
SPRET/EiJ	ENSMSPG00010046781	lncRNA gene	Chr5:101018017-101020234 (-)
WSB/EiJ	ENSIUOG00005032602	lncRNA gene	Chr5:101624747-101627179 (-)

Homology

• Gene Tree
  Gm57323
  

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000121168 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121168	Ensembl Gene Model | MGI Sequence Detail	2512	C57BL/6J
transcript	ENSMUST00000247371	Ensembl | MGI Sequence Detail	1433	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57323:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr52326	Chr5:105844020-105844045 (-)	46 bp
Tssr1572	Chr5:105843997-105844010 (-)	75 bp
Tssr52325	Chr5:105841842-105841865 (-)	2,225 bp