Gm57322 Gene Detail

Summary

• Symbol
  Gm57322
• Name
  predicted gene, 57322

• Feature Type
  lncRNA gene
• IDs
  MGI:7338557
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:89356080-89356956 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  43 from dbSNP Build 142
• Strain Annotations
  33

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338557	lncRNA gene	Chr5:89356080-89356956 (-)
129S1/SvImJ	no annotation
A/J	ENSMUSG00195001023	lncRNA gene	Chr13:111360489-111361365 (+)
A/J	ENSMUSG00195048413	lncRNA gene	Chr6:66605339-66606215 (+)
A/J	ENSMUSG00195047818	lncRNA gene	Chr7:115569210-115570086 (-)
A/J	ENSMUSG00195026518	lncRNA gene	Chr5:84257723-84258599 (-)
A/J	ENSMUSG00195009309	lncRNA gene	Chr10:106335613-106336489 (+)
A/J	ENSMUSG00195042789	lncRNA gene	Chr13:18818204-18819080 (-)
A/J	ENSMUSG00195049255	lncRNA gene	ChrX:123027789-123028665 (-)
A/J	ENSMUSG00195047254	lncRNA gene	Chr5:135906734-135907610 (-)
A/J	ENSMUSG00195002407	lncRNA gene	Chr18:14528594-14529470 (-)
A/J	ENSMUSG00195000343	lncRNA gene	Chr4:23478068-23478944 (+)
AKR/J	ENSMUSG00220038425	lncRNA gene	Chr7:123319698-123320574 (-)
AKR/J	ENSMUSG00220016490	lncRNA gene	Chr16:88943496-88944372 (-)
AKR/J	ENSMUSG00220020342	lncRNA gene	Chr19:30112128-30113004 (+)
AKR/J	ENSMUSG00220042086	lncRNA gene	Chr13:69325634-69326510 (-)
AKR/J	ENSMUSG00220005489	lncRNA gene	Chr2:104974678-104975554 (-)
AKR/J	ENSMUSG00220024344	lncRNA gene	Chr5:133148070-133148946 (+)
AKR/J	ENSMUSG00220014833	lncRNA gene	Chr4:23251776-23252652 (+)
AKR/J	ENSMUSG00220038920	lncRNA gene	Chr4:39626367-39627243 (+)
AKR/J	ENSMUSG00220012675	lncRNA gene	Chr5:84400952-84401828 (-)
AKR/J	ENSMUSG00220041701	lncRNA gene	ChrX:36272008-36272884 (-)
AKR/J	ENSMUSG00220016191	lncRNA gene	Chr3:50396031-50396907 (+)
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	ENSMUSG00215055084	lncRNA gene	Chr7:11778601-11779466 (-)
C57BL/6NJ	ENSMUSG00215036603	lncRNA gene	Chr5:83909446-83910322 (-)
C57BL/6NJ	ENSMUSG00215003665	lncRNA gene	Chr11:16298201-16299075 (+)
C57BL/6NJ	ENSMUSG00215036296	lncRNA gene	Chr12:69266029-69266903 (+)
C57BL/6NJ	ENSMUSG00215035982	lncRNA gene	Chr12:61570956-61571832 (+)
C57BL/6NJ	ENSMUSG00215034891	lncRNA gene	Chr5:84950647-84951523 (-)
C57BL/6NJ	ENSMUSG00215024387	lncRNA gene	Chr9:72596286-72597160 (-)
C57BL/6NJ	ENSMUSG00215048898	lncRNA gene	Chr7:123565742-123566618 (-)
C57BL/6NJ	ENSMUSG00215028521	lncRNA gene	Chr16:22008624-22009500 (+)
C57BL/6NJ	ENSMUSG00215029415	lncRNA gene	Chr13:109515757-109516633 (+)
C57BL/6NJ	ENSMUSG00215007887	lncRNA gene	Chr14:100874279-100875155 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
JF1/MsJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm57322
  

Sequences &
Gene Models

• All Sequences
  35

• Ensembl
  ENSMUSG00000121166 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121166	Ensembl Gene Model | MGI Sequence Detail	877	C57BL/6J
transcript	ENSMUST00000247367	Ensembl | MGI Sequence Detail	877	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57322:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr51699	Chr5:89356968-89356980 (-)	-18 bp