Gm57318 Gene Detail

Summary

• Symbol
  Gm57318
• Name
  predicted gene, 57318

• Feature Type
  lncRNA gene
• IDs
  MGI:7338549
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr5:24056466-24127725 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  2992 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338549	lncRNA gene	Chr5:24056466-24127725 (-)
129S1/SvImJ	ENSMUSG00200011373	lncRNA gene	Chr5:19733252-19743483 (-)
A/J	ENSMUSG00195040693	lncRNA gene	Chr5:19195050-19205221 (-)
AKR/J	ENSMUSG00220037970	lncRNA gene	Chr5:19285763-19296021 (-)
BALB/cJ	ENSMUSG00180025215	lncRNA gene	Chr5:19062593-19072824 (-)
C3H/HeJ	ENSMUSG00175049687	lncRNA gene	Chr5:20993263-21003440 (-)
C57BL/6NJ	ENSMUSG00215026215	lncRNA gene	Chr5:19628924-19639101 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005003408	lncRNA gene	Chr5:19207491-19217719 (-)
CBA/J	ENSMUSG00210005421	lncRNA gene	Chr5:20032650-20042821 (-)
DBA/2J	ENSMUSG00185038186	lncRNA gene	Chr5:21571274-21581406 (-)
FVB/NJ	ENSMUSG00205036548	lncRNA gene	Chr5:18795988-18806208 (-)
JF1/MsJ	ENSUMUG00000006975	lncRNA gene	Chr5:26128301-26138476 (-)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190005182	lncRNA gene	Chr5:19107262-19117514 (-)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010036850	lncRNA gene	Chr5:19173763-19183937 (-)
SPRET/EiJ	ENSMSPG00010030155	lncRNA gene	Chr5:20043523-20053542 (-)
WSB/EiJ	ENSIUOG00005043017	lncRNA gene	Chr5:21922386-21932575 (-)

Homology

• Gene Tree
  Gm57318
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  35

• Ensembl
  ENSMUSG00000120302 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120302	Ensembl Gene Model | MGI Sequence Detail	71260	C57BL/6J
transcript	ENSMUST00000268368	Ensembl | MGI Sequence Detail	1916	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm57318:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr50299	Chr5:24127912-24127927 (-)	-195 bp
Tssr50298	Chr5:24127658-24127692 (-)	50 bp