Gm57316 Gene Detail

Summary

• Symbol
  Gm57316
• Name
  predicted gene, 57316

• Feature Type
  lncRNA gene
• IDs
  MGI:7338545
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:137053872-137054342 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  78 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338545	lncRNA gene	Chr5:137053872-137054342 (+)
129S1/SvImJ	ENSMUSG00200047519	lncRNA gene	Chr5:130843683-130843838 (+)
A/J	ENSMUSG00195051153	lncRNA gene	Chr5:130346313-130346468 (+)
AKR/J	ENSMUSG00220051245	lncRNA gene	Chr5:129829451-129829606 (+)
BALB/cJ	ENSMUSG00180046384	lncRNA gene	Chr5:130442934-130443089 (+)
C3H/HeJ	ENSMUSG00175049586	lncRNA gene	Chr5:132370495-132370650 (+)
C57BL/6NJ	ENSMUSG00215049787	lncRNA gene	Chr5:130497260-130497415 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005010840	lncRNA gene	Chr5:129720938-129721092 (+)
CBA/J	ENSMUSG00210008628	lncRNA gene	Chr5:131188071-131188226 (+)
DBA/2J	ENSMUSG00185055649	lncRNA gene	Chr5:134203450-134203605 (+)
FVB/NJ	ENSMUSG00205048914	lncRNA gene	Chr5:130087849-130088004 (+)
JF1/MsJ	ENSUMUG00000055112	lncRNA gene	Chr5:137104048-137104203 (+)
LP/J	ENSMUSG00230049660	lncRNA gene	Chr5:138316909-138317064 (+)
NOD/ShiLtJ	ENSMUSG00190047703	lncRNA gene	Chr5:130142744-130142899 (+)
NZO/HlLtJ	ENSMUSG00225023822	lncRNA gene	Chr5:145998524-145998679 (+)
PWK/PhJ	ENSLUMG00010018477	lncRNA gene	Chr5:128959784-128959939 (+)
SPRET/EiJ	ENSMSPG00010040980	lncRNA gene	Chr5:132365364-132365519 (+)
WSB/EiJ	ENSIUOG00005036795	lncRNA gene	Chr5:132799849-132800004 (+)

Homology

• Gene Tree
  Gm57316
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000121146 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121146	Ensembl Gene Model | MGI Sequence Detail	471	C57BL/6J
transcript	ENSMUST00000247285	Ensembl | MGI Sequence Detail	471	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57316:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr49303	Chr5:137054169-137054192 (+)	309 bp