Gm57315 Gene Detail

Summary

• Symbol
  Gm57315
• Name
  predicted gene, 57315

• Feature Type
  lncRNA gene
• IDs
  MGI:7338543
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr5:30428092-30437477 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  111 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338543	lncRNA gene	Chr5:30428092-30437477 (-)
129S1/SvImJ	ENSMUSG00200014584	lncRNA gene	Chr5:25919154-25928460 (-)
A/J	ENSMUSG00195050166	lncRNA gene	Chr5:25376016-25385322 (-)
AKR/J	ENSMUSG00220009019	lncRNA gene	Chr5:25384409-25393715 (-)
BALB/cJ	ENSMUSG00180038708	lncRNA gene	Chr5:25180634-25189940 (-)
C3H/HeJ	ENSMUSG00175048880	lncRNA gene	Chr5:27155001-27164307 (-)
C57BL/6NJ	ENSMUSG00215042354	lncRNA gene	Chr5:25890629-25899935 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005025359	lncRNA gene	Chr5:25360560-25369859 (-)
CBA/J	ENSMUSG00210048771	lncRNA gene	Chr5:26128208-26137514 (-)
DBA/2J	ENSMUSG00185038364	lncRNA gene	Chr5:27981931-27991237 (-)
FVB/NJ	ENSMUSG00205042011	lncRNA gene	Chr5:24879575-24888881 (-)
JF1/MsJ	ENSUMUG00000054093	lncRNA gene	Chr5:32523599-32533059 (-)
LP/J	ENSMUSG00230048446	lncRNA gene	Chr5:32589649-32598955 (-)
NOD/ShiLtJ	ENSMUSG00190017009	lncRNA gene	Chr5:25179013-25188319 (-)
NZO/HlLtJ	ENSMUSG00225021752	lncRNA gene	Chr5:37806508-37815814 (-)
PWK/PhJ	ENSLUMG00010047995	lncRNA gene	Chr5:25277363-25286802 (-)
SPRET/EiJ	ENSMSPG00010044440	lncRNA gene	Chr5:26414097-26414173 (-)
WSB/EiJ	ENSIUOG00005043457	lncRNA gene	Chr5:28081689-28090995 (-)

Homology

• Gene Tree
  Gm57315
  

Sequences &
Gene Models

• All Sequences
  26

• Ensembl
  ENSMUSG00000120241 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120241	Ensembl Gene Model | MGI Sequence Detail	9386	C57BL/6J
transcript	ENSMUST00000242064	Ensembl | MGI Sequence Detail	1839	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57315:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr50487	Chr5:30437364-30437407 (-)	91 bp
Tssr50486	Chr5:30437342-30437347 (-)	132 bp