Gm57314 Gene Detail

Summary

• Symbol
  Gm57314
• Name
  predicted gene, 57314

• Feature Type
  lncRNA gene
• IDs
  MGI:7338541
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr5:113711245-113738245 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1002 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338541	lncRNA gene	Chr5:113711245-113738245 (-)
129S1/SvImJ	ENSMUSG00200023249	lncRNA gene	Chr5:107451946-107475240 (-)
A/J	ENSMUSG00195039990	lncRNA gene	Chr5:106961901-106985189 (-)
AKR/J	ENSMUSG00220052490	lncRNA gene	Chr5:106480123-106503416 (-)
BALB/cJ	ENSMUSG00180047912	lncRNA gene	Chr5:107102378-107125677 (-)
C3H/HeJ	ENSMUSG00175050227	lncRNA gene	Chr5:109080960-109104680 (-)
C57BL/6NJ	ENSMUSG00215036039	lncRNA gene	Chr5:107111173-107134468 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005031745	lncRNA gene	Chr5:106281428-106304890 (-)
CBA/J	ENSMUSG00210046635	lncRNA gene	Chr5:107833034-107856767 (-)
DBA/2J	ENSMUSG00185050149	lncRNA gene	Chr5:110886451-110909742 (-)
FVB/NJ	ENSMUSG00205052185	lncRNA gene	Chr5:106740113-106763414 (-)
JF1/MsJ	ENSUMUG00000055202	lncRNA gene	Chr5:113723934-113747252 (-)
LP/J	ENSMUSG00230048805	lncRNA gene	Chr5:114990170-115013466 (-)
NOD/ShiLtJ	ENSMUSG00190051049	lncRNA gene	Chr5:106779276-106802570 (-)
NZO/HlLtJ	ENSMUSG00225017402	lncRNA gene	Chr5:122636234-122659522 (-)
PWK/PhJ	ENSLUMG00010039463	lncRNA gene	Chr5:105628957-105652828 (-)
SPRET/EiJ	ENSMSPG00010046424	lncRNA gene	Chr5:108903025-108926533 (-)
WSB/EiJ	ENSIUOG00005044062	lncRNA gene	Chr5:109476696-109500419 (-)

Homology

• Gene Tree
  Gm57314
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  17
• Gene trapped
  17
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  28

• Ensembl
  ENSMUSG00000120761 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120761	Ensembl Gene Model | MGI Sequence Detail	27001	C57BL/6J
transcript	ENSMUST00000275514	Ensembl | MGI Sequence Detail	907	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm57314:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr52641	Chr5:113734496-113734529 (-)	3,732 bp
Tssr52640	Chr5:113724139-113724160 (-)	14,095 bp