Gm57313 Gene Detail

Summary

• Symbol
  Gm57313
• Name
  predicted gene, 57313

• Feature Type
  lncRNA gene
• IDs
  MGI:7338539
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:38719155-38719484 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  75 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338539	lncRNA gene	Chr5:38719155-38719484 (+)
129S1/SvImJ	ENSMUSG00200032830	lncRNA gene	Chr5:34170768-34171048 (+)
A/J	ENSMUSG00195030824	lncRNA gene	Chr5:33616512-33616792 (+)
AKR/J	ENSMUSG00220002628	lncRNA gene	Chr5:33643268-33643548 (+)
BALB/cJ	ENSMUSG00180026738	lncRNA gene	Chr5:33419306-33419586 (+)
C3H/HeJ	ENSMUSG00175020474	lncRNA gene	Chr5:35403385-35403665 (+)
C57BL/6NJ	ENSMUSG00215006257	lncRNA gene	Chr5:34170621-34170901 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005025027	lncRNA gene	Chr5:33618619-33618899 (+)
CBA/J	ENSMUSG00210005395	lncRNA gene	Chr5:34365370-34365650 (+)
DBA/2J	ENSMUSG00185017611	lncRNA gene	Chr5:36254796-36255076 (+)
FVB/NJ	ENSMUSG00205020909	lncRNA gene	Chr5:33137228-33137508 (+)
JF1/MsJ	ENSUMUG00000002241	lncRNA gene	Chr5:40813723-40814000 (+)
LP/J	ENSMUSG00230003034	lncRNA gene	Chr5:40897801-40898081 (+)
NOD/ShiLtJ	ENSMUSG00190003319	lncRNA gene	Chr5:33441746-33442026 (+)
NZO/HlLtJ	ENSMUSG00225017864	lncRNA gene	Chr5:46044310-46044590 (+)
PWK/PhJ	ENSLUMG00010023883	lncRNA gene	Chr5:33490588-33490865 (+)
SPRET/EiJ	ENSMSPG00010037155	lncRNA gene	Chr5:34729115-34729398 (+)
WSB/EiJ	ENSIUOG00005018770	lncRNA gene	Chr5:36326488-36326768 (+)

Homology

• Gene Tree
  Gm57313
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000121120 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121120	Ensembl Gene Model | MGI Sequence Detail	330	C57BL/6J
transcript	ENSMUST00000247205	Ensembl | MGI Sequence Detail	330	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57313:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr46063	Chr5:38719238-38719268 (+)	98 bp