Gm57311 Gene Detail

Summary

• Symbol
  Gm57311
• Name
  predicted gene, 57311

• Feature Type
  lncRNA gene
• IDs
  MGI:7338535
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr5:120579323-120579524 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  42 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338535	lncRNA gene	Chr5:120579323-120579524 (+)
129S1/SvImJ	ENSMUSG00200030356	lncRNA gene	Chr5:114318529-114318689 (+)
A/J	ENSMUSG00195013062	lncRNA gene	Chr5:113839643-113839803 (+)
AKR/J	ENSMUSG00220046274	lncRNA gene	Chr5:113340423-113340584 (+)
BALB/cJ	ENSMUSG00180038348	lncRNA gene	Chr5:113954224-113954384 (+)
C3H/HeJ	ENSMUSG00175030879	lncRNA gene	Chr5:115952281-115952441 (+)
C57BL/6NJ	ENSMUSG00215043355	lncRNA gene	Chr5:113986200-113986360 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005042421	lncRNA gene	Chr5:113159632-113159785 (+)
CBA/J	ENSMUSG00210010436	lncRNA gene	Chr5:114703181-114703341 (+)
DBA/2J	ENSMUSG00185054106	lncRNA gene	Chr5:117762543-117762703 (+)
FVB/NJ	ENSMUSG00205045305	lncRNA gene	Chr5:113616348-113616510 (+)
JF1/MsJ	ENSUMUG00000054507	lncRNA gene	Chr5:120598933-120599091 (+)
LP/J	ENSMUSG00230047535	lncRNA gene	Chr5:121840737-121840897 (+)
NOD/ShiLtJ	ENSMUSG00190043719	lncRNA gene	Chr5:113650441-113650601 (+)
NZO/HlLtJ	ENSMUSG00225018342	lncRNA gene	Chr5:129517908-129518068 (+)
PWK/PhJ	ENSLUMG00010046572	lncRNA gene	Chr5:112499344-112499500 (+)
SPRET/EiJ	ENSMSPG00010046499	lncRNA gene	Chr5:115817042-115817205 (+)
WSB/EiJ	ENSIUOG00005019193	lncRNA gene	Chr5:116341490-116341648 (+)

Homology

• Gene Tree
  Gm57311
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000121101 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121101	Ensembl Gene Model | MGI Sequence Detail	202	C57BL/6J
transcript	ENSMUST00000247128	Ensembl | MGI Sequence Detail	202	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57311:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr48508	Chr5:120578653-120578672 (+)	-660 bp
Tssr48509	Chr5:120579364-120579372 (+)	45 bp