Gm57309 Gene Detail

Summary

• Symbol
  Gm57309
• Name
  predicted gene, 57309

• Feature Type
  lncRNA gene
• IDs
  MGI:7338531
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr5:142881020-142883799 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  142 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338531	lncRNA gene	Chr5:142881020-142883799 (+)
129S1/SvImJ	ENSMUSG00200041750	lncRNA gene	Chr5:136751866-136752757 (+)
A/J	ENSMUSG00195046897	lncRNA gene	Chr5:136393414-136394304 (+)
AKR/J	ENSMUSG00220023431	lncRNA gene	Chr5:135629236-135630127 (+)
BALB/cJ	ENSMUSG00180035587	lncRNA gene	Chr5:136495477-136496367 (+)
C3H/HeJ	ENSMUSG00175050185	lncRNA gene	Chr5:138421040-138421930 (+)
C57BL/6NJ	ENSMUSG00215042293	lncRNA gene	Chr5:136329631-136330521 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005036760	lncRNA gene	Chr5:135774737-135775630 (+)
CBA/J	ENSMUSG00210024053	lncRNA gene	Chr5:137222736-137223627 (+)
DBA/2J	ENSMUSG00185055246	lncRNA gene	Chr5:140228617-140229508 (+)
FVB/NJ	ENSMUSG00205044406	lncRNA gene	Chr5:136051808-136052698 (+)
JF1/MsJ	ENSUMUG00000049874	lncRNA gene	Chr5:143100406-143101289 (+)
LP/J	ENSMUSG00230030111	lncRNA gene	Chr5:144355625-144356516 (+)
NOD/ShiLtJ	ENSMUSG00190045547	lncRNA gene	Chr5:136190785-136191675 (+)
NZO/HlLtJ	ENSMUSG00225024032	lncRNA gene	Chr5:151825052-151825942 (+)
PWK/PhJ	ENSLUMG00010021052	lncRNA gene	Chr5:134814418-134815305 (+)
SPRET/EiJ	ENSMSPG00010039511	lncRNA gene	Chr5:138428005-138428865 (+)
WSB/EiJ	ENSIUOG00005040702	lncRNA gene	Chr5:138714712-138715602 (+)

Homology

• Gene Tree
  Gm57309
  

Sequences &
Gene Models

• All Sequences
  23

• Ensembl
  ENSMUSG00000121070 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121070	Ensembl Gene Model | MGI Sequence Detail	2780	C57BL/6J
transcript	ENSMUST00000247066	Ensembl | MGI Sequence Detail	911	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;