Gm57308 Gene Detail

Summary

• Symbol
  Gm57308
• Name
  predicted gene, 57308

• Feature Type
  lncRNA gene
• IDs
  MGI:7338529
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:100360135-100386313 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  930 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338529	lncRNA gene	Chr5:100360135-100386313 (-)
129S1/SvImJ	ENSMUSG00200007083	lncRNA gene	Chr5:94123739-94126862 (-)
A/J	ENSMUSG00195035008	lncRNA gene	Chr5:93683218-93686341 (-)
AKR/J	ENSMUSG00220038152	lncRNA gene	Chr5:93152721-93155844 (-)
BALB/cJ	ENSMUSG00180036913	lncRNA gene	Chr5:93839366-93842489 (-)
C3H/HeJ	ENSMUSG00175033510	lncRNA gene	Chr5:95944007-95947130 (-)
C57BL/6NJ	ENSMUSG00215021190	lncRNA gene	Chr5:93767387-93770510 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005025411	lncRNA gene	Chr5:93144592-93147716 (-)
CBA/J	ENSMUSG00210034775	lncRNA gene	Chr5:94694340-94697463 (-)
DBA/2J	ENSMUSG00185039104	lncRNA gene	Chr5:97612688-97615811 (-)
FVB/NJ	ENSMUSG00205044830	lncRNA gene	Chr5:93589490-93592613 (-)
JF1/MsJ	ENSUMUG00000046810	lncRNA gene	Chr5:100586168-100589292 (-)
LP/J	ENSMUSG00230033579	lncRNA gene	Chr5:101665454-101668577 (-)
NOD/ShiLtJ	ENSMUSG00190027674	lncRNA gene	Chr5:93597910-93601033 (-)
NZO/HlLtJ	ENSMUSG00225013351	lncRNA gene	Chr5:109428518-109431641 (-)
PWK/PhJ	ENSLUMG00010016446	lncRNA gene	Chr5:92709319-92712438 (-)
SPRET/EiJ	ENSMSPG00010025587	lncRNA gene	Chr5:95601867-95605021 (-)
WSB/EiJ	ENSIUOG00005031439	lncRNA gene	Chr5:96331646-96334769 (-)

Homology

• Gene Tree
  Gm57308
  

Sequences &
Gene Models

• All Sequences
  52

• Ensembl
  ENSMUSG00000121065 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121065	Ensembl Gene Model | MGI Sequence Detail	26179	C57BL/6J
transcript	ENSMUST00000379944	Ensembl | MGI Sequence Detail	2321	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57308:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr52082	Chr5:100385347-100385376 (-)	951 bp