Gm57306 Gene Detail

Summary

• Symbol
  Gm57306
• Name
  predicted gene, 57306

• Feature Type
  lncRNA gene
• IDs
  MGI:7338525
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr5:27996679-27997721 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  123 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338525	lncRNA gene	Chr5:27996679-27997721 (+)
129S1/SvImJ	ENSMUSG00200014324	lncRNA gene	Chr5:23496127-23496528 (+)
A/J	ENSMUSG00195050431	lncRNA gene	Chr5:22953272-22953673 (+)
AKR/J	ENSMUSG00220008961	lncRNA gene	Chr5:22960936-22961337 (+)
BALB/cJ	ENSMUSG00180040401	lncRNA gene	Chr5:22757917-22758318 (+)
C3H/HeJ	ENSMUSG00175048226	lncRNA gene	Chr5:24732390-24732791 (+)
C57BL/6NJ	ENSMUSG00215042428	lncRNA gene	Chr5:23512833-23513234 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005024756	lncRNA gene	Chr5:22984928-22985329 (+)
CBA/J	ENSMUSG00210049536	lncRNA gene	Chr5:23705685-23706086 (+)
DBA/2J	ENSMUSG00185038706	lncRNA gene	Chr5:25549096-25549497 (+)
FVB/NJ	ENSMUSG00205041824	lncRNA gene	Chr5:22532443-22532844 (+)
JF1/MsJ	ENSUMUG00000007738	lncRNA gene	Chr5:30113466-30113867 (+)
LP/J	ENSMUSG00230048378	lncRNA gene	Chr5:30181522-30181923 (+)
NOD/ShiLtJ	ENSMUSG00190016237	lncRNA gene	Chr5:22810766-22811167 (+)
NZO/HlLtJ	ENSMUSG00225021577	lncRNA gene	Chr5:35403134-35403535 (+)
PWK/PhJ	ENSLUMG00010049611	lncRNA gene	Chr5:22880861-22881262 (+)
SPRET/EiJ	ENSMSPG00010045022	lncRNA gene	Chr5:23979874-23980267 (+)
WSB/EiJ	ENSIUOG00005042521	lncRNA gene	Chr5:25676190-25676591 (+)

Homology

• Gene Tree
  Gm57306
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120915 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120915	Ensembl Gene Model | MGI Sequence Detail	1043	C57BL/6J
transcript	ENSMUST00000246464	Ensembl | MGI Sequence Detail	1043	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57306:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr45505	Chr5:27996721-27996751 (+)	57 bp
Tssr45506	Chr5:27996756-27996789 (+)	94 bp