Gm57305 Gene Detail

Summary

• Symbol
  Gm57305
• Name
  predicted gene, 57305

• Feature Type
  lncRNA gene
• IDs
  MGI:7338523
• Alliance
  genome feature page
• Transcription Start Sites
  10 TSS

Location &
Maps

• Sequence Map
  Chr5:115625883-115628282 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  241 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338523	lncRNA gene	Chr5:115625883-115628282 (-)
129S1/SvImJ	ENSMUSG00200023719	lncRNA gene	Chr5:109367182-109367557 (-)
A/J	ENSMUSG00195041850	lncRNA gene	Chr5:108889098-108889471 (-)
AKR/J	ENSMUSG00220052641	lncRNA gene	Chr5:108396570-108396945 (-)
BALB/cJ	ENSMUSG00180047673	lncRNA gene	Chr5:109017921-109018296 (-)
C3H/HeJ	ENSMUSG00175049094	lncRNA gene	Chr5:111005555-111005931 (-)
C57BL/6NJ	ENSMUSG00215038144	lncRNA gene	Chr5:109028689-109029065 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210047402	lncRNA gene	Chr5:109756940-109757316 (-)
DBA/2J	ENSMUSG00185054055	lncRNA gene	Chr5:112815939-112816314 (-)
FVB/NJ	ENSMUSG00205053170	lncRNA gene	Chr5:108654792-108655168 (-)
JF1/MsJ	ENSUMUG00000054407	lncRNA gene	Chr5:115636432-115636815 (-)
LP/J	ENSMUSG00230049081	lncRNA gene	Chr5:116905332-116905707 (-)
NOD/ShiLtJ	ENSMUSG00190050281	lncRNA gene	Chr5:108694426-108694802 (-)
NZO/HlLtJ	ENSMUSG00225016073	lncRNA gene	Chr5:124565338-124565713 (-)
PWK/PhJ	ENSLUMG00010040751	lncRNA gene	Chr5:107535376-107535759 (-)
SPRET/EiJ	ENSMSPG00010046158	lncRNA gene	Chr5:110817470-110817836 (-)
WSB/EiJ	ENSIUOG00005046863	lncRNA gene	Chr5:111397656-111398026 (-)

Homology

• Gene Tree
  Gm57305
  

Sequences &
Gene Models

• All Sequences
  26

• Ensembl
  ENSMUSG00000121040 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121040	Ensembl Gene Model | MGI Sequence Detail	2400	C57BL/6J
transcript	ENSMUST00000314648	Ensembl | MGI Sequence Detail	711	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm57305:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr52817	Chr5:115629945-115629961 (-)	-1,671 bp
Tssr52816	Chr5:115628403-115628437 (-)	-138 bp
Tssr52815	Chr5:115628244-115628263 (-)	28 bp
Tssr52814	Chr5:115628050-115628095 (-)	209 bp
Tssr52813	Chr5:115628014-115628040 (-)	255 bp
Tssr52812	Chr5:115628002-115628012 (-)	275 bp
Tssr52811	Chr5:115627889-115627899 (-)	388 bp
Tssr52810	Chr5:115627612-115627642 (-)	655 bp
Tssr52809	Chr5:115627003-115627008 (-)	1,276 bp
Tssr52808	Chr5:115626981-115626991 (-)	1,296 bp