Gm57304 Gene Detail

Summary

• Symbol
  Gm57304
• Name
  predicted gene, 57304

• Feature Type
  lncRNA gene
• IDs
  MGI:7338521
• Alliance
  genome feature page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr5:137262491-137287128 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  624 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338521	lncRNA gene	Chr5:137262491-137287128 (-)
129S1/SvImJ	ENSMUSG00200048357	lncRNA gene	Chr5:131059615-131061416 (-)
A/J	ENSMUSG00195051470	lncRNA gene	Chr5:130562328-130564129 (-)
AKR/J	ENSMUSG00220051334	lncRNA gene	Chr5:130037590-130039341 (-)
BALB/cJ	ENSMUSG00180047372	lncRNA gene	Chr5:130658892-130660693 (-)
C3H/HeJ	ENSMUSG00175049505	lncRNA gene	Chr5:132586440-132588241 (-)
C57BL/6NJ	ENSMUSG00215049951	lncRNA gene	Chr5:130708243-130710040 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005011200	lncRNA gene	Chr5:129929830-129931579 (-)
CBA/J	ENSMUSG00210008579	lncRNA gene	Chr5:131404012-131405813 (-)
DBA/2J	ENSMUSG00185055345	lncRNA gene	Chr5:134419398-134421199 (-)
FVB/NJ	ENSMUSG00205050159	lncRNA gene	Chr5:130303835-130305636 (-)
JF1/MsJ	ENSUMUG00000054955	lncRNA gene	Chr5:137309714-137311483 (-)
LP/J	ENSMUSG00230049761	lncRNA gene	Chr5:138532891-138534692 (-)
NOD/ShiLtJ	ENSMUSG00190049201	lncRNA gene	Chr5:130358689-130360490 (-)
NZO/HlLtJ	ENSMUSG00225024098	lncRNA gene	Chr5:146207991-146209720 (-)
PWK/PhJ	ENSLUMG00010019381	lncRNA gene	Chr5:129166164-129167911 (-)
SPRET/EiJ	ENSMSPG00010042192	lncRNA gene	Chr5:132570034-132571700 (-)
WSB/EiJ	ENSIUOG00005037368	lncRNA gene	Chr5:133009639-133011390 (-)

Homology

• Gene Tree
  Gm57304
  

Sequences &
Gene Models

• All Sequences
  27

• Ensembl
  ENSMUSG00000121013 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121013	Ensembl Gene Model | MGI Sequence Detail	24638	C57BL/6J
transcript	ENSMUST00000380269	Ensembl | MGI Sequence Detail	1263	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57304:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr1718	Chr5:137266988-137267013 (-)	20,127 bp
Tssr1717	Chr5:137266902-137266946 (-)	20,204 bp
Tssr1716	Chr5:137266810-137266840 (-)	20,303 bp
Tssr1715	Chr5:137266437-137266442 (-)	20,688 bp
Tssr1714	Chr5:137264227-137264253 (-)	22,888 bp