Gm57302 Gene Detail

Summary

• Symbol
  Gm57302
• Name
  predicted gene, 57302

• Feature Type
  lncRNA gene
• IDs
  MGI:7338517
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:138087549-138088061 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  113 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338517	lncRNA gene	Chr5:138087549-138088061 (+)
129S1/SvImJ	ENSMUSG00200048660	lncRNA gene	Chr5:131900421-131900883 (+)
A/J	ENSMUSG00195051828	lncRNA gene	Chr5:131373638-131374297 (+)
AKR/J	ENSMUSG00220050900	lncRNA gene	Chr5:130838341-130838797 (+)
BALB/cJ	ENSMUSG00180046803	lncRNA gene	Chr5:131470216-131470875 (+)
C3H/HeJ	ENSMUSG00175048184	lncRNA gene	Chr5:133397703-133398362 (+)
C57BL/6NJ	ENSMUSG00215049289	lncRNA gene	Chr5:131531247-131531709 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005010962	lncRNA gene	Chr5:130718725-130719180 (+)
CBA/J	ENSMUSG00210024162	lncRNA gene	Chr5:132215251-132215910 (+)
DBA/2J	ENSMUSG00185055008	lncRNA gene	Chr5:135230581-135231240 (+)
FVB/NJ	ENSMUSG00205049726	lncRNA gene	Chr5:131114322-131114981 (+)
JF1/MsJ	ENSUMUG00000054169	lncRNA gene	Chr5:138099570-138100026 (+)
LP/J	ENSMUSG00230049862	lncRNA gene	Chr5:139344051-139344710 (+)
NOD/ShiLtJ	ENSMUSG00190047897	lncRNA gene	Chr5:131169887-131170546 (+)
NZO/HlLtJ	ENSMUSG00225024088	lncRNA gene	Chr5:147017089-147017545 (+)
PWK/PhJ	ENSLUMG00010019050	lncRNA gene	Chr5:129973290-129973948 (+)
SPRET/EiJ	ENSMSPG00010041394	lncRNA gene	Chr5:133344070-133344529 (+)
WSB/EiJ	ENSIUOG00005038722	lncRNA gene	Chr5:133816821-133817488 (+)

Homology

• Gene Tree
  Gm57302
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000121004 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121004	Ensembl Gene Model | MGI Sequence Detail	513	C57BL/6J
transcript	ENSMUST00000246831	Ensembl | MGI Sequence Detail	513	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57302:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr49410	Chr5:138087545-138087557 (+)	2 bp