Gm57301 Gene Detail

Summary

• Symbol
  Gm57301
• Name
  predicted gene, 57301

• Feature Type
  lncRNA gene
• IDs
  MGI:7338515
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr5:142803529-142804717 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  51 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338515	lncRNA gene	Chr5:142803529-142804717 (+)
129S1/SvImJ	ENSMUSG00200042185	lncRNA gene	Chr5:136674747-136675826 (+)
A/J	ENSMUSG00195045552	lncRNA gene	Chr5:136315777-136316857 (+)
AKR/J	ENSMUSG00220023276	lncRNA gene	Chr5:135552118-135553198 (+)
BALB/cJ	ENSMUSG00180033507	lncRNA gene	Chr5:136417839-136418917 (+)
C3H/HeJ	ENSMUSG00175048144	lncRNA gene	Chr5:138343415-138344495 (+)
C57BL/6NJ	ENSMUSG00215042531	lncRNA gene	Chr5:136252004-136253082 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005035952	lncRNA gene	Chr5:135697739-135698819 (+)
CBA/J	ENSMUSG00210024219	lncRNA gene	Chr5:137144962-137146041 (+)
DBA/2J	ENSMUSG00185055495	lncRNA gene	Chr5:140151520-140152600 (+)
FVB/NJ	ENSMUSG00205045051	lncRNA gene	Chr5:135974187-135975264 (+)
JF1/MsJ	ENSUMUG00000052898	lncRNA gene	Chr5:143022803-143023876 (+)
LP/J	ENSMUSG00230031261	lncRNA gene	Chr5:144278523-144279602 (+)
NOD/ShiLtJ	ENSMUSG00190047658	lncRNA gene	Chr5:136113172-136114249 (+)
NZO/HlLtJ	ENSMUSG00225023951	lncRNA gene	Chr5:151747470-151748547 (+)
PWK/PhJ	ENSLUMG00010020870	lncRNA gene	Chr5:134736677-134737760 (+)
SPRET/EiJ	ENSMSPG00010041367	lncRNA gene	Chr5:138352535-138353600 (+)
WSB/EiJ	ENSIUOG00005039842	lncRNA gene	Chr5:138636830-138637898 (+)

Homology

• Gene Tree
  Gm57301
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000119945 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000119945	Ensembl Gene Model | MGI Sequence Detail	1189	C57BL/6J
transcript	ENSMUST00000240776	Ensembl | MGI Sequence Detail	1189	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57301:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr49590	Chr5:142802480-142802496 (+)	-1,041 bp
Tssr49591	Chr5:142803638-142803641 (+)	111 bp
Tssr49592	Chr5:142803786-142803848 (+)	288 bp