Gm57300 Gene Detail

Summary

• Symbol
  Gm57300
• Name
  predicted gene, 57300

• Feature Type
  lncRNA gene
• IDs
  MGI:7338513
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:77274414-77287851 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  563 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338513	lncRNA gene	Chr5:77274414-77287851 (+)
129S1/SvImJ	ENSMUSG00200001128	lncRNA gene	Chr5:72964914-72974081 (+)
A/J	ENSMUSG00195010905	lncRNA gene	Chr5:72271012-72280184 (+)
AKR/J	ENSMUSG00220014940	lncRNA gene	Chr5:72383453-72392622 (+)
BALB/cJ	ENSMUSG00180000119	lncRNA gene	Chr5:72036121-72045303 (+)
C3H/HeJ	ENSMUSG00175004306	lncRNA gene	Chr5:74072751-74081920 (+)
C57BL/6NJ	ENSMUSG00215000514	lncRNA gene	Chr5:72851293-72860460 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005013675	lncRNA gene	Chr5:71820683-71829883 (+)
CBA/J	ENSMUSG00210000566	lncRNA gene	Chr5:73010671-73019840 (+)
DBA/2J	ENSMUSG00185016732	lncRNA gene	Chr5:74840627-74849796 (+)
FVB/NJ	ENSMUSG00205001170	lncRNA gene	Chr5:71798962-71808131 (+)
JF1/MsJ	ENSUMUG00000007040	lncRNA gene	Chr5:79328898-79338290 (+)
LP/J	ENSMUSG00230022743	lncRNA gene	Chr5:79538868-79548035 (+)
NOD/ShiLtJ	ENSMUSG00190007709	lncRNA gene	Chr5:71961431-71970611 (+)
NZO/HlLtJ	ENSMUSG00225034593	lncRNA gene	Chr5:84585893-84595060 (+)
PWK/PhJ	ENSLUMG00010007569	lncRNA gene	Chr5:71901620-71910997 (+)
SPRET/EiJ	ENSMSPG00010010339	lncRNA gene	Chr5:73913581-73922811 (+)
WSB/EiJ	ENSIUOG00005018698	lncRNA gene	Chr5:74806630-74815785 (+)

Homology

• Gene Tree
  Gm57300
  

Sequences &
Gene Models

• All Sequences
  25

• Ensembl
  ENSMUSG00000120897 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120897	Ensembl Gene Model | MGI Sequence Detail	13438	C57BL/6J
transcript	ENSMUST00000340832	Ensembl | MGI Sequence Detail	2207	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57300:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr46775	Chr5:77274531-77274548 (+)	126 bp