Gm57299 Gene Detail

Summary

• Symbol
  Gm57299
• Name
  predicted gene, 57299

• Feature Type
  lncRNA gene
• IDs
  MGI:7338511
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:137305729-137306328 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  116 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338511	lncRNA gene	Chr5:137305729-137306328 (+)
129S1/SvImJ	ENSMUSG00200047769	lncRNA gene	Chr5:131100466-131100743 (+)
A/J	ENSMUSG00195050834	lncRNA gene	Chr5:130603161-130603438 (+)
AKR/J	ENSMUSG00220051091	lncRNA gene	Chr5:130078484-130078761 (+)
BALB/cJ	ENSMUSG00180047112	lncRNA gene	Chr5:130699726-130700003 (+)
C3H/HeJ	ENSMUSG00175048351	lncRNA gene	Chr5:132627272-132627549 (+)
C57BL/6NJ	ENSMUSG00215049675	lncRNA gene	Chr5:130749110-130749387 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005010746	lncRNA gene	Chr5:129970556-129970832 (+)
CBA/J	ENSMUSG00210008291	lncRNA gene	Chr5:131444842-131445119 (+)
DBA/2J	ENSMUSG00185055124	lncRNA gene	Chr5:134460231-134460508 (+)
FVB/NJ	ENSMUSG00205049455	lncRNA gene	Chr5:130344671-130344948 (+)
JF1/MsJ	ENSUMUG00000054852	lncRNA gene	Chr5:137350570-137350847 (+)
LP/J	ENSMUSG00230049805	lncRNA gene	Chr5:138573711-138573988 (+)
NOD/ShiLtJ	ENSMUSG00190049274	lncRNA gene	Chr5:130399520-130399797 (+)
NZO/HlLtJ	ENSMUSG00225024127	lncRNA gene	Chr5:146248983-146249260 (+)
PWK/PhJ	ENSLUMG00010018879	lncRNA gene	Chr5:129207033-129207310 (+)
SPRET/EiJ	ENSMSPG00010039038	lncRNA gene	Chr5:132609687-132609964 (+)
WSB/EiJ	ENSIUOG00005039562	lncRNA gene	Chr5:133050513-133050790 (+)

Homology

• Gene Tree
  Gm57299
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  6
• Gene trapped
  6
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120862 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120862	Ensembl Gene Model | MGI Sequence Detail	600	C57BL/6J
transcript	ENSMUST00000246178	Ensembl | MGI Sequence Detail	600	Not Applicable

References

• Summaries
  All 3

  Phenotypes 2
• Earliest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm57299:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr49328	Chr5:137306010-137306065 (+)	309 bp