Gm57295 Gene Detail

Summary

• Symbol
  Gm57295
• Name
  predicted gene, 57295

• Feature Type
  lncRNA gene
• IDs
  MGI:7338503
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr5:109845522-109995253 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  4694 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338503	lncRNA gene	Chr5:109845522-109995253 (-)
129S1/SvImJ	ENSMUSG00200023973	lncRNA gene	Chr5:103738749-103748695 (-)
A/J	ENSMUSG00195041737	lncRNA gene	Chr5:103218922-103228874 (-)
AKR/J	ENSMUSG00220052673	lncRNA gene	Chr5:102754053-102763998 (-)
BALB/cJ	ENSMUSG00180049124	lncRNA gene	Chr5:103370655-103380605 (-)
C3H/HeJ	ENSMUSG00175049629	lncRNA gene	Chr5:105387105-105397038 (-)
C57BL/6NJ	ENSMUSG00215036719	lncRNA gene	Chr5:103380176-103390119 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005035295	lncRNA gene	Chr5:102446627-102521263 (-)
CBA/J	ENSMUSG00210046775	lncRNA gene	Chr5:104139280-104149218 (-)
DBA/2J	ENSMUSG00185049496	lncRNA gene	Chr5:107131858-107141757 (-)
FVB/NJ	ENSMUSG00205052717	lncRNA gene	Chr5:103067971-103077904 (-)
JF1/MsJ	ENSUMUG00000017887	lncRNA gene	Chr5:109980422-109990372 (-)
LP/J	ENSMUSG00230032733	lncRNA gene	Chr5:111277237-111287183 (-)
NOD/ShiLtJ	ENSMUSG00190050959	lncRNA gene	Chr5:103046236-103056180 (-)
NZO/HlLtJ	ENSMUSG00225026528	lncRNA gene	Chr5:118899084-118909030 (-)
PWK/PhJ	ENSLUMG00010043017	lncRNA gene	Chr5:101899483-101909424 (-)
SPRET/EiJ	ENSMSPG00010048312	lncRNA gene	Chr5:105223718-105233872 (-)
WSB/EiJ	ENSIUOG00005045872	lncRNA gene	Chr5:105766000-105775942 (-)

Homology

• Gene Tree
  Gm57295
  

Sequences &
Gene Models

• All Sequences
  47

• Ensembl
  ENSMUSG00000120227 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120227	Ensembl Gene Model | MGI Sequence Detail	149732	C57BL/6J
transcript	ENSMUST00000357328	Ensembl | MGI Sequence Detail	2294	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm57295:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr52482	Chr5:109992884-109992924 (-)	2,349 bp
Tssr52481	Chr5:109992868-109992875 (-)	2,381 bp
Tssr52480	Chr5:109944136-109944152 (-)	51,109 bp