Gm57294 Gene Detail

Summary

• Symbol
  Gm57294
• Name
  predicted gene, 57294

• Feature Type
  lncRNA gene
• IDs
  MGI:7338501
• Alliance
  genome feature page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr5:23637823-23639363 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  69 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338501	lncRNA gene	Chr5:23637823-23639363 (+)
129S1/SvImJ	ENSMUSG00200011876	lncRNA gene	Chr5:19260676-19261845 (+)
A/J	ENSMUSG00195041285	lncRNA gene	Chr5:18715403-18716572 (+)
AKR/J	ENSMUSG00220037674	lncRNA gene	Chr5:18810078-18811247 (+)
BALB/cJ	ENSMUSG00180025267	lncRNA gene	Chr5:18593638-18594807 (+)
C3H/HeJ	ENSMUSG00175027586	lncRNA gene	Chr5:20513643-20514812 (+)
C57BL/6NJ	ENSMUSG00215029834	lncRNA gene	Chr5:19149260-19150429 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005003511	lncRNA gene	Chr5:18735133-18736301 (+)
CBA/J	ENSMUSG00210005461	lncRNA gene	Chr5:19553212-19554381 (+)
DBA/2J	ENSMUSG00185038421	lncRNA gene	Chr5:21104097-21105266 (+)
FVB/NJ	ENSMUSG00205036881	lncRNA gene	Chr5:18327067-18328236 (+)
JF1/MsJ	ENSUMUG00000006796	lncRNA gene	Chr5:25648526-25649695 (+)
LP/J	ENSMUSG00230025808	lncRNA gene	Chr5:25542876-25544045 (+)
NOD/ShiLtJ	ENSMUSG00190005296	lncRNA gene	Chr5:18631647-18632816 (+)
NZO/HlLtJ	ENSMUSG00225020632	lncRNA gene	Chr5:30940501-30941670 (+)
PWK/PhJ	ENSLUMG00010036099	lncRNA gene	Chr5:18704554-18705723 (+)
SPRET/EiJ	ENSMSPG00010031589	lncRNA gene	Chr5:19568517-19569687 (+)
WSB/EiJ	ENSIUOG00005044037	lncRNA gene	Chr5:21446320-21447489 (+)

Homology

• Gene Tree
  Gm57294
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  5
• Gene trapped
  4
• Targeted
  1
• Genomic Mutations
  1 involving Gm57294
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120367 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120367	Ensembl Gene Model | MGI Sequence Detail	1541	C57BL/6J
transcript	ENSMUST00000242816	Ensembl | MGI Sequence Detail	1541	Not Applicable

References

• Summaries
  All 3

  Phenotypes 2
• Earliest
  J:269071 Wong JC, et al., Functional evidence implicating chromosome 7q22 haploinsufficiency in myelodysplastic syndrome pathogenesis. Elife. 2015 Jul 20;4

TSS for Gm57294:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr45363	Chr5:23637821-23637826 (+)	1 bp
Tssr45364	Chr5:23638081-23638129 (+)	282 bp
Tssr45365	Chr5:23638150-23638161 (+)	333 bp
Tssr45366	Chr5:23638439-23638529 (+)	661 bp