Gm57291 Gene Detail

Summary

• Symbol
  Gm57291
• Name
  predicted gene, 57291

• Feature Type
  lncRNA gene
• IDs
  MGI:7338495
• Alliance
  genome feature page
• Transcription Start Sites
  6 TSS

Location &
Maps

• Sequence Map
  Chr5:122640508-122641665 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  97 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338495	lncRNA gene	Chr5:122640508-122641665 (+)
129S1/SvImJ	ENSMUSG00200029638	lncRNA gene	Chr5:116366367-116367515 (+)
A/J	ENSMUSG00195012312	lncRNA gene	Chr5:115887713-115888861 (+)
AKR/J	ENSMUSG00220046227	lncRNA gene	Chr5:115402001-115403151 (+)
BALB/cJ	ENSMUSG00180041547	lncRNA gene	Chr5:116002249-116003398 (+)
C3H/HeJ	ENSMUSG00175033850	lncRNA gene	Chr5:118021924-118023074 (+)
C57BL/6NJ	ENSMUSG00215043658	lncRNA gene	Chr5:116047745-116048895 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005041826	lncRNA gene	Chr5:115301368-115302516 (+)
CBA/J	ENSMUSG00210010902	lncRNA gene	Chr5:116772754-116773903 (+)
DBA/2J	ENSMUSG00185055481	lncRNA gene	Chr5:119823966-119825115 (+)
FVB/NJ	ENSMUSG00205045048	lncRNA gene	Chr5:115677583-115678732 (+)
JF1/MsJ	ENSUMUG00000051222	lncRNA gene	Chr5:122670499-122671642 (+)
LP/J	ENSMUSG00230048100	lncRNA gene	Chr5:123888408-123889556 (+)
NOD/ShiLtJ	ENSMUSG00190047309	lncRNA gene	Chr5:115699547-115700695 (+)
NZO/HlLtJ	ENSMUSG00225017260	lncRNA gene	Chr5:131580785-131581935 (+)
PWK/PhJ	ENSLUMG00010042924	lncRNA gene	Chr5:114581730-114582876 (+)
SPRET/EiJ	ENSMSPG00010044934	lncRNA gene	Chr5:117890009-117891158 (+)
WSB/EiJ	ENSIUOG00005020269	lncRNA gene	Chr5:118388408-118389555 (+)

Homology

• Gene Tree
  Gm57291
  

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000120573 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120573	Ensembl Gene Model | MGI Sequence Detail	1158	C57BL/6J
transcript	ENSMUST00000244264	Ensembl | MGI Sequence Detail	1158	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57291:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr48697	Chr5:122638789-122638798 (+)	-1,714 bp
Tssr1626	Chr5:122638992-122638994 (+)	-1,515 bp
Tssr48698	Chr5:122639623-122639676 (+)	-858 bp
Tssr48699	Chr5:122639771-122639798 (+)	-723 bp
Tssr48700	Chr5:122639844-122639873 (+)	-649 bp
Tssr48701	Chr5:122640529-122640545 (+)	29 bp