Gm57290 Gene Detail

Summary

• Symbol
  Gm57290
• Name
  predicted gene, 57290

• Feature Type
  lncRNA gene
• IDs
  MGI:7338493
• Alliance
  genome feature page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr5:119934045-119936277 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  89 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338493	lncRNA gene	Chr5:119934045-119936277 (+)
129S1/SvImJ	ENSMUSG00200030842	lncRNA gene	Chr5:113680560-113682236 (+)
A/J	ENSMUSG00195012256	lncRNA gene	Chr5:113201567-113203244 (+)
AKR/J	ENSMUSG00220047445	lncRNA gene	Chr5:112695321-112696997 (+)
BALB/cJ	ENSMUSG00180038439	lncRNA gene	Chr5:113316136-113317813 (+)
C3H/HeJ	ENSMUSG00175030544	lncRNA gene	Chr5:115311596-115313273 (+)
C57BL/6NJ	ENSMUSG00215043456	lncRNA gene	Chr5:113340918-113342594 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005041661	lncRNA gene	Chr5:112521194-112522870 (+)
CBA/J	ENSMUSG00210010593	lncRNA gene	Chr5:114062567-114064244 (+)
DBA/2J	ENSMUSG00185053953	lncRNA gene	Chr5:117124513-117126189 (+)
FVB/NJ	ENSMUSG00205044594	lncRNA gene	Chr5:112977950-112979627 (+)
JF1/MsJ	ENSUMUG00000054604	lncRNA gene	Chr5:119961834-119963510 (+)
LP/J	ENSMUSG00230049088	lncRNA gene	Chr5:121202810-121204486 (+)
NOD/ShiLtJ	ENSMUSG00190047981	lncRNA gene	Chr5:113012136-113013813 (+)
NZO/HlLtJ	ENSMUSG00225018230	lncRNA gene	Chr5:128879962-128881639 (+)
PWK/PhJ	ENSLUMG00010046021	lncRNA gene	Chr5:111863026-111864703 (+)
SPRET/EiJ	ENSMSPG00010044574	lncRNA gene	Chr5:115171178-115172857 (+)
WSB/EiJ	ENSIUOG00005019487	lncRNA gene	Chr5:115701299-115702976 (+)

Homology

• Gene Tree
  Gm57290
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120759 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120759	Ensembl Gene Model | MGI Sequence Detail	2233	C57BL/6J
transcript	ENSMUST00000245666	Ensembl | MGI Sequence Detail	1856	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57290:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr48473	Chr5:119934578-119934609 (+)	549 bp
Tssr48474	Chr5:119934612-119934621 (+)	572 bp
Tssr48475	Chr5:119934708-119934722 (+)	670 bp
Tssr48476	Chr5:119934724-119934747 (+)	691 bp