Gm57287 Gene Detail

Summary

• Symbol
  Gm57287
• Name
  predicted gene, 57287

• Feature Type
  lncRNA gene
• IDs
  MGI:7338487
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:142353187-142354444 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  173 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338487	lncRNA gene	Chr5:142353187-142354444 (+)
129S1/SvImJ	ENSMUSG00200042120	lncRNA gene	Chr5:136223563-136224491 (+)
A/J	ENSMUSG00195046221	lncRNA gene	Chr5:135858917-135859845 (+)
AKR/J	ENSMUSG00220023550	lncRNA gene	Chr5:135100894-135101822 (+)
BALB/cJ	ENSMUSG00180033667	lncRNA gene	Chr5:135961038-135961966 (+)
C3H/HeJ	ENSMUSG00175048708	lncRNA gene	Chr5:137886662-137887590 (+)
C57BL/6NJ	ENSMUSG00215041576	lncRNA gene	Chr5:135800684-135801612 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005036439	lncRNA gene	Chr5:135241967-135242893 (+)
CBA/J	ENSMUSG00210024462	lncRNA gene	Chr5:136693179-136694104 (+)
DBA/2J	ENSMUSG00185055624	lncRNA gene	Chr5:139700322-139701250 (+)
FVB/NJ	ENSMUSG00205046012	lncRNA gene	Chr5:135522884-135523809 (+)
JF1/MsJ	ENSUMUG00000054023	lncRNA gene	Chr5:142570988-142571916 (+)
LP/J	ENSMUSG00230031285	lncRNA gene	Chr5:143827384-143828312 (+)
NOD/ShiLtJ	ENSMUSG00190047371	lncRNA gene	Chr5:135656370-135657295 (+)
NZO/HlLtJ	ENSMUSG00225023967	lncRNA gene	Chr5:151296240-151297168 (+)
PWK/PhJ	ENSLUMG00010021006	lncRNA gene	Chr5:134284870-134285796 (+)
SPRET/EiJ	ENSMSPG00010041653	lncRNA gene	Chr5:137895709-137896634 (+)
WSB/EiJ	ENSIUOG00005039101	lncRNA gene	Chr5:138185219-138186144 (+)

Homology

• Gene Tree
  Gm57287
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120342 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120342	Ensembl Gene Model | MGI Sequence Detail	1258	C57BL/6J
transcript	ENSMUST00000242675	Ensembl | MGI Sequence Detail	1258	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57287:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr49575	Chr5:142353533-142353568 (+)	364 bp