Gm57285 Gene Detail

Summary

• Symbol
  Gm57285
• Name
  predicted gene, 57285

• Feature Type
  lncRNA gene
• IDs
  MGI:7338483
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr5:43120883-43279559 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  3728 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338483	lncRNA gene	Chr5:43120883-43279559 (+)
129S1/SvImJ	ENSMUSG00200033117	lncRNA gene	Chr5:38717769-38737609 (+)
A/J	ENSMUSG00195030301	lncRNA gene	Chr5:38123126-38142972 (+)
AKR/J	ENSMUSG00220002541	lncRNA gene	Chr5:38159855-38179704 (+)
BALB/cJ	ENSMUSG00180024178	lncRNA gene	Chr5:37963696-37976763 (+)
C3H/HeJ	ENSMUSG00175020605	lncRNA gene	Chr5:39918845-39938689 (+)
C57BL/6NJ	ENSMUSG00215006192	lncRNA gene	Chr5:38677587-38697431 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005025157	lncRNA gene	Chr5:38050510-38063421 (+)
CBA/J	ENSMUSG00210005344	lncRNA gene	Chr5:38883955-38903794 (+)
DBA/2J	ENSMUSG00185001919	lncRNA gene	Chr5:40775805-40795663 (+)
FVB/NJ	ENSMUSG00205019915	lncRNA gene	Chr5:37695141-37711424 (+)
JF1/MsJ	ENSUMUG00000002290	lncRNA gene	Chr5:45358486-45371675 (+)
LP/J	ENSMUSG00230002838	lncRNA gene	Chr5:45417765-45437604 (+)
NOD/ShiLtJ	ENSMUSG00190003373	lncRNA gene	Chr5:37958703-37978552 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010023593	lncRNA gene	Chr5:38016648-38029858 (+)
SPRET/EiJ	ENSMSPG00010037117	lncRNA gene	Chr5:39288309-39301650 (+)
WSB/EiJ	ENSIUOG00005019218	lncRNA gene	Chr5:40852543-40871836 (+)

Homology

• Gene Tree
  Gm57285
  

Sequences &
Gene Models

• All Sequences
  25

• Ensembl
  ENSMUSG00000120713 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120713	Ensembl Gene Model | MGI Sequence Detail	158677	C57BL/6J
transcript	ENSMUST00000245384	Ensembl | MGI Sequence Detail	1584	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57285:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr46074	Chr5:43220123-43220145 (+)	99,251 bp
Tssr46075	Chr5:43261318-43261330 (+)	140,441 bp