Gm57281 Gene Detail

Summary

• Symbol
  Gm57281
• Name
  predicted gene, 57281

• Feature Type
  lncRNA gene
• IDs
  MGI:7338475
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:137074438-137077257 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  192 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338475	lncRNA gene	Chr5:137074438-137077257 (+)
129S1/SvImJ	ENSMUSG00200047545	lncRNA gene	Chr5:130864452-130866714 (+)
A/J	ENSMUSG00195051169	lncRNA gene	Chr5:130367084-130369346 (+)
AKR/J	ENSMUSG00220051258	lncRNA gene	Chr5:129850121-129852376 (+)
BALB/cJ	ENSMUSG00180046415	lncRNA gene	Chr5:130463705-130465967 (+)
C3H/HeJ	ENSMUSG00175049609	lncRNA gene	Chr5:132391264-132393526 (+)
C57BL/6NJ	ENSMUSG00215049810	lncRNA gene	Chr5:130518056-130520329 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005010847	lncRNA gene	Chr5:129741577-129743844 (+)
CBA/J	ENSMUSG00210008636	lncRNA gene	Chr5:131208844-131211106 (+)
DBA/2J	ENSMUSG00185055662	lncRNA gene	Chr5:134224223-134226485 (+)
FVB/NJ	ENSMUSG00205048938	lncRNA gene	Chr5:130108625-130110885 (+)
JF1/MsJ	ENSUMUG00000055143	lncRNA gene	Chr5:137124682-137126914 (+)
LP/J	ENSMUSG00230049708	lncRNA gene	Chr5:138337673-138339933 (+)
NOD/ShiLtJ	ENSMUSG00190047745	lncRNA gene	Chr5:130163515-130165775 (+)
NZO/HlLtJ	ENSMUSG00225023848	lncRNA gene	Chr5:146019293-146021553 (+)
PWK/PhJ	ENSLUMG00010018511	lncRNA gene	Chr5:128980364-128982593 (+)
SPRET/EiJ	ENSMSPG00010041045	lncRNA gene	Chr5:132385935-132388220 (+)
WSB/EiJ	ENSIUOG00005036828	lncRNA gene	Chr5:132820526-132822781 (+)

Homology

• Gene Tree
  Gm57281
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  26

• Ensembl
  ENSMUSG00000120602 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120602	Ensembl Gene Model | MGI Sequence Detail	2820	C57BL/6J
transcript	ENSMUST00000244623	Ensembl | MGI Sequence Detail	1091	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm57281:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr49306	Chr5:137074996-137075032 (+)	576 bp