Gm57280 Gene Detail

Summary

• Symbol
  Gm57280
• Name
  predicted gene, 57280

• Feature Type
  lncRNA gene
• IDs
  MGI:7338473
• Alliance
  genome feature page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr5:36854423-36871286 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  463 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338473	lncRNA gene	Chr5:36854423-36871286 (-)
129S1/SvImJ	ENSMUSG00200032804	lncRNA gene	Chr5:32317334-32319725 (-)
A/J	ENSMUSG00195030799	lncRNA gene	Chr5:31782744-31785135 (-)
AKR/J	ENSMUSG00220002403	lncRNA gene	Chr5:31809346-31811737 (-)
BALB/cJ	ENSMUSG00180024034	lncRNA gene	Chr5:31585592-31587983 (-)
C3H/HeJ	ENSMUSG00175020088	lncRNA gene	Chr5:33569839-33572230 (-)
C57BL/6NJ	ENSMUSG00215006403	lncRNA gene	Chr5:32317168-32319559 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005024541	lncRNA gene	Chr5:31798715-31801105 (-)
CBA/J	ENSMUSG00210005476	lncRNA gene	Chr5:32533868-32536259 (-)
DBA/2J	ENSMUSG00185018389	lncRNA gene	Chr5:34401189-34403580 (-)
FVB/NJ	ENSMUSG00205021332	lncRNA gene	Chr5:31285264-31287655 (-)
JF1/MsJ	ENSUMUG00000053849	lncRNA gene	Chr5:39009749-39012144 (-)
LP/J	ENSMUSG00230048818	lncRNA gene	Chr5:39044510-39046901 (-)
NOD/ShiLtJ	ENSMUSG00190003464	lncRNA gene	Chr5:31584516-31586907 (-)
NZO/HlLtJ	ENSMUSG00225018452	lncRNA gene	Chr5:44216399-44218790 (-)
PWK/PhJ	ENSLUMG00010023349	lncRNA gene	Chr5:31689994-31692389 (-)
SPRET/EiJ	ENSMSPG00010037789	lncRNA gene	Chr5:32916886-32919270 (-)
WSB/EiJ	ENSIUOG00005018446	lncRNA gene	Chr5:34505084-34507475 (-)

Homology

• Gene Tree
  Gm57280
  

Sequences &
Gene Models

• All Sequences
  48

• Ensembl
  ENSMUSG00000120374 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120374	Ensembl Gene Model | MGI Sequence Detail	16864	C57BL/6J
transcript	ENSMUST00000242845	Ensembl | MGI Sequence Detail	2803	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57280:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr50758	Chr5:36870680-36870743 (-)	574 bp
Tssr50757	Chr5:36870601-36870639 (-)	666 bp
Tssr50756	Chr5:36870454-36870486 (-)	816 bp
Tssr50755	Chr5:36869454-36869455 (-)	1,831 bp
Tssr50754	Chr5:36869326-36869373 (-)	1,936 bp