Gm57274 Gene Detail

Summary

• Symbol
  Gm57274
• Name
  predicted gene, 57274

• Feature Type
  lncRNA gene
• IDs
  MGI:7338461
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:128673901-128674394 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  102 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338461	lncRNA gene	Chr5:128673901-128674394 (+)
129S1/SvImJ	ENSMUSG00200047408	lncRNA gene	Chr5:122410976-122411395 (+)
A/J	ENSMUSG00195051769	lncRNA gene	Chr5:121942668-121943087 (+)
AKR/J	ENSMUSG00220050406	lncRNA gene	Chr5:121420313-121420732 (+)
BALB/cJ	ENSMUSG00180044637	lncRNA gene	Chr5:122050150-122050569 (+)
C3H/HeJ	ENSMUSG00175039638	lncRNA gene	Chr5:124025889-124026308 (+)
C57BL/6NJ	ENSMUSG00215049163	lncRNA gene	Chr5:122088565-122088984 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005010664	lncRNA gene	Chr5:121283275-121283694 (+)
CBA/J	ENSMUSG00210008074	lncRNA gene	Chr5:122776624-122777043 (+)
DBA/2J	ENSMUSG00185008622	lncRNA gene	Chr5:125829181-125829600 (+)
FVB/NJ	ENSMUSG00205046656	lncRNA gene	Chr5:121711080-121711499 (+)
JF1/MsJ	ENSUMUG00000053934	lncRNA gene	Chr5:128715517-128715936 (+)
LP/J	ENSMUSG00230048365	lncRNA gene	Chr5:129926965-129927384 (+)
NOD/ShiLtJ	ENSMUSG00190047418	lncRNA gene	Chr5:121697361-121697780 (+)
NZO/HlLtJ	ENSMUSG00225014670	lncRNA gene	Chr5:137622412-137622831 (+)
PWK/PhJ	ENSLUMG00010044331	lncRNA gene	Chr5:120593921-120594340 (+)
SPRET/EiJ	ENSMSPG00010031786	lncRNA gene	Chr5:123923210-123923629 (+)
WSB/EiJ	ENSIUOG00005035888	lncRNA gene	Chr5:124403046-124403465 (+)

Homology

• Gene Tree
  Gm57274
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120619 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120619	Ensembl Gene Model | MGI Sequence Detail	494	C57BL/6J
transcript	ENSMUST00000244634	Ensembl | MGI Sequence Detail	494	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm57274:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr48978	Chr5:128673968-128673988 (+)	77 bp