Gm57270 Gene Detail

Summary

• Symbol
  Gm57270
• Name
  predicted gene, 57270

• Feature Type
  lncRNA gene
• IDs
  MGI:7338453
• Alliance
  genome feature page
• Transcription Start Sites
  8 TSS

Location &
Maps

• Sequence Map
  Chr5:142805638-142809398 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  90 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338453	lncRNA gene	Chr5:142805638-142809398 (-)
129S1/SvImJ	ENSMUSG00200042192	lncRNA gene	Chr5:136676986-136678575 (-)
A/J	ENSMUSG00195045564	lncRNA gene	Chr5:136318017-136319591 (-)
AKR/J	ENSMUSG00220023281	lncRNA gene	Chr5:135554358-135555948 (-)
BALB/cJ	ENSMUSG00180033516	lncRNA gene	Chr5:136420077-136421653 (-)
C3H/HeJ	ENSMUSG00175048160	lncRNA gene	Chr5:138345655-138347229 (-)
C57BL/6NJ	ENSMUSG00215042534	lncRNA gene	Chr5:136254242-136255818 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005035958	lncRNA gene	Chr5:135699991-135701620 (-)
CBA/J	ENSMUSG00210024222	lncRNA gene	Chr5:137147201-137148773 (-)
DBA/2J	ENSMUSG00185055503	lncRNA gene	Chr5:140153760-140155348 (-)
FVB/NJ	ENSMUSG00205045078	lncRNA gene	Chr5:135976424-135977996 (-)
JF1/MsJ	ENSUMUG00000052915	lncRNA gene	Chr5:143025034-143026669 (-)
LP/J	ENSMUSG00230031169	lncRNA gene	Chr5:144280762-144282350 (-)
NOD/ShiLtJ	ENSMUSG00190047677	lncRNA gene	Chr5:136115409-136116981 (-)
NZO/HlLtJ	ENSMUSG00225023916	lncRNA gene	Chr5:151749707-151751281 (-)
PWK/PhJ	ENSLUMG00010020883	lncRNA gene	Chr5:134738919-134740474 (-)
SPRET/EiJ	ENSMSPG00010041378	lncRNA gene	Chr5:138354768-138356335 (-)
WSB/EiJ	ENSIUOG00005039854	lncRNA gene	Chr5:138639057-138640619 (-)

Homology

• Gene Tree
  Gm57270
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120419 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120419	Ensembl Gene Model | MGI Sequence Detail	3761	C57BL/6J
transcript	ENSMUST00000243202	Ensembl | MGI Sequence Detail	3761	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57270:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr54309	Chr5:142808719-142808755 (-)	661 bp
Tssr54308	Chr5:142808592-142808610 (-)	797 bp
Tssr54307	Chr5:142808565-142808576 (-)	827 bp
Tssr54306	Chr5:142808103-142808143 (-)	1,275 bp
Tssr54305	Chr5:142807561-142807578 (-)	1,828 bp
Tssr54304	Chr5:142807436-142807460 (-)	1,950 bp
Tssr54303	Chr5:142807196-142807211 (-)	2,194 bp
Tssr54302	Chr5:142807040-142807045 (-)	2,355 bp