Gm57269 Gene Detail

Summary

• Symbol
  Gm57269
• Name
  predicted gene, 57269

• Feature Type
  lncRNA gene
• IDs
  MGI:7338451
• Alliance
  genome feature page
• Transcription Start Sites
  8 TSS

Location &
Maps

• Sequence Map
  Chr5:130199430-130200635 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  133 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338451	lncRNA gene	Chr5:130199430-130200635 (-)
129S1/SvImJ	ENSMUSG00200047787	lncRNA gene	Chr5:123945348-123946175 (-)
A/J	ENSMUSG00195051758	lncRNA gene	Chr5:123482278-123483105 (-)
AKR/J	ENSMUSG00220050342	lncRNA gene	Chr5:122956031-122956858 (-)
BALB/cJ	ENSMUSG00180045028	lncRNA gene	Chr5:123589619-123590446 (-)
C3H/HeJ	ENSMUSG00175042664	lncRNA gene	Chr5:125555617-125556444 (-)
C57BL/6NJ	ENSMUSG00215050054	lncRNA gene	Chr5:123617770-123618597 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005010897	lncRNA gene	Chr5:122865308-122866136 (-)
CBA/J	ENSMUSG00210007952	lncRNA gene	Chr5:124306287-124307114 (-)
DBA/2J	ENSMUSG00185008081	lncRNA gene	Chr5:127358269-127359096 (-)
FVB/NJ	ENSMUSG00205049326	lncRNA gene	Chr5:123239523-123240350 (-)
JF1/MsJ	ENSUMUG00000052949	lncRNA gene	Chr5:130248308-130249135 (-)
LP/J	ENSMUSG00230049356	lncRNA gene	Chr5:131461229-131462056 (-)
NOD/ShiLtJ	ENSMUSG00190047946	lncRNA gene	Chr5:123261270-123262097 (-)
NZO/HlLtJ	ENSMUSG00225014521	lncRNA gene	Chr5:139156611-139157438 (-)
PWK/PhJ	ENSLUMG00010018681	lncRNA gene	Chr5:122131595-122132422 (-)
SPRET/EiJ	ENSMSPG00010033291	lncRNA gene	Chr5:125556804-125557622 (-)
WSB/EiJ	ENSIUOG00005035603	lncRNA gene	Chr5:125939993-125940820 (-)

Homology

• Gene Tree
  Gm57269
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000119946 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000119946	Ensembl Gene Model | MGI Sequence Detail	1206	C57BL/6J
transcript	ENSMUST00000240782	Ensembl | MGI Sequence Detail	1206	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57269:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr53529	Chr5:130201437-130201447 (-)	-807 bp
Tssr53528	Chr5:130201414-130201426 (-)	-785 bp
Tssr53527	Chr5:130201303-130201312 (-)	-673 bp
Tssr53526	Chr5:130201251-130201281 (-)	-631 bp
Tssr53525	Chr5:130201189-130201203 (-)	-561 bp
Tssr53524	Chr5:130200565-130200589 (-)	58 bp
Tssr53523	Chr5:130200411-130200431 (-)	214 bp
Tssr53522	Chr5:130200382-130200409 (-)	239 bp