Gm57259 Gene Detail

Summary

• Symbol
  Gm57259
• Name
  predicted gene, 57259

• Feature Type
  lncRNA gene
• IDs
  MGI:7338431
• Alliance
  genome feature page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr5:146572222-146643243 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  2579 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338431	lncRNA gene	Chr5:146572222-146643243 (-)
129S1/SvImJ	ENSMUSG00200042363	lncRNA gene	Chr5:140446576-140458584 (-)
A/J	ENSMUSG00195046072	lncRNA gene	Chr5:140057480-140069478 (-)
AKR/J	ENSMUSG00220023492	lncRNA gene	Chr5:139064736-139076695 (-)
BALB/cJ	ENSMUSG00180034415	lncRNA gene	Chr5:140439962-140451962 (-)
C3H/HeJ	ENSMUSG00175012466	lncRNA gene	Chr5:142283087-142295085 (-)
C57BL/6NJ	ENSMUSG00215041505	lncRNA gene	Chr5:140001685-140013672 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005035782	lncRNA gene	Chr5:139577857-139589808 (-)
CBA/J	ENSMUSG00210024284	lncRNA gene	Chr5:141200835-141212794 (-)
DBA/2J	ENSMUSG00185041215	lncRNA gene	Chr5:144169317-144181365 (-)
FVB/NJ	ENSMUSG00205043553	lncRNA gene	Chr5:139812582-139824571 (-)
JF1/MsJ	ENSUMUG00000050241	lncRNA gene	Chr5:146659885-146672118 (-)
LP/J	ENSMUSG00230031032	lncRNA gene	Chr5:148163529-148175533 (-)
NOD/ShiLtJ	ENSMUSG00190046882	lncRNA gene	Chr5:139811551-139823555 (-)
NZO/HlLtJ	ENSMUSG00225009044	lncRNA gene	Chr5:155915017-155926976 (-)
PWK/PhJ	ENSLUMG00010021880	lncRNA gene	Chr5:138897172-138909477 (-)
SPRET/EiJ	ENSMSPG00010006987	lncRNA gene	Chr5:141704341-141716314 (-)
WSB/EiJ	ENSIUOG00005038855	lncRNA gene	Chr5:142572682-142584648 (-)

Homology

• Gene Tree
  Gm57259
  

Sequences &
Gene Models

• All Sequences
  70

• Ensembl
  ENSMUSG00000120417 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120417	Ensembl Gene Model | MGI Sequence Detail	71022	C57BL/6J
transcript	ENSMUST00000264256	Ensembl | MGI Sequence Detail	1442	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm57259:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr54479	Chr5:146624313-146624330 (-)	18,921 bp
Tssr1752	Chr5:146598735-146598737 (-)	44,507 bp
Tssr54478	Chr5:146592410-146592424 (-)	50,826 bp
Tssr54477	Chr5:146592359-146592393 (-)	50,867 bp